Meta‐analysis of deep‐sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns
High‐throughput amplicon sequencing gives new insights into fungal community ecology.
Massively generated molecular data lead to the discovery of vast fungal diversity. However …
Massively generated molecular data lead to the discovery of vast fungal diversity. However …
How to know the fungi: combining field inventories and DNA-barcoding to document fungal diversity
The fungi kingdom is among the most diverse eukaryotic lineages on Earth with estimates of
several million extant species (O'Brien et al., 2005; Blackwell, 2011; Taylor et al., 2014) …
several million extant species (O'Brien et al., 2005; Blackwell, 2011; Taylor et al., 2014) …
Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide
BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …
resolution and magnitude. They enable identification and relative quantification of …
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
Soil fungi play a major role in ecological and biogeochemical processes in forests. Little is
known, however, about the structure and richness of different fungal communities and the …
known, however, about the structure and richness of different fungal communities and the …
Protax‐fungi: a web‐based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences
Incompleteness of reference sequence databases and unresolved taxonomic relationships
complicates taxonomic placement of fungal sequences. We developed Protax‐fungi, a …
complicates taxonomic placement of fungal sequences. We developed Protax‐fungi, a …
More bang for the buck? Can arbuscular mycorrhizal fungal communities be characterized adequately alongside other fungi using general fungal primers?
Background High throughput sequencing has revolutionized microbial ecology. We now
have the ability to characterize both prokaryotic and eukaryotic microbial communities more …
have the ability to characterize both prokaryotic and eukaryotic microbial communities more …
Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities
Next-generation amplicon sequencing is a powerful tool in ecological studies of fungi.
Technological development suggests that short fragment high-throughput techniques, eg …
Technological development suggests that short fragment high-throughput techniques, eg …
Phyllosphere fungal communities differentiate more thoroughly than bacterial communities along an elevation gradient
The distance-decay pattern of similarity in ecological communities has been recognized by
ecologists for decades [1]. Such a pattern has been shown for diverse macroorganisms and …
ecologists for decades [1]. Such a pattern has been shown for diverse macroorganisms and …
[HTML][HTML] GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies
Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition,
symbiotic associations with cultivated and wild plants and pathogenicity. The high …
symbiotic associations with cultivated and wild plants and pathogenicity. The high …
Future perspectives and challenges of fungal systematics in the age of big data
Mycological research, especially research on fungal evolution and ecology, requires a
robust and detailed fungal classification and phylogeny to facilitate efficient and informative …
robust and detailed fungal classification and phylogeny to facilitate efficient and informative …