Meta‐analysis of deep‐sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns

A Meiser, M Bálint, I Schmitt - New Phytologist, 2014 - Wiley Online Library
High‐throughput amplicon sequencing gives new insights into fungal community ecology.
Massively generated molecular data lead to the discovery of vast fungal diversity. However …

How to know the fungi: combining field inventories and DNA-barcoding to document fungal diversity

C Truong, AB Mujic, R Healy, F Kuhar, G Furci… - New Phytologist, 2017 - JSTOR
The fungi kingdom is among the most diverse eukaryotic lineages on Earth with estimates of
several million extant species (O'Brien et al., 2005; Blackwell, 2011; Taylor et al., 2014) …

Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide

BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

M Buée, M Reich, C Murat, E Morin… - New …, 2009 - Wiley Online Library
Soil fungi play a major role in ecological and biogeochemical processes in forests. Little is
known, however, about the structure and richness of different fungal communities and the …

Protax‐fungi: a web‐based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences

K Abarenkov, P Somervuo, RH Nilsson… - New …, 2018 - Wiley Online Library
Incompleteness of reference sequence databases and unresolved taxonomic relationships
complicates taxonomic placement of fungal sequences. We developed Protax‐fungi, a …

More bang for the buck? Can arbuscular mycorrhizal fungal communities be characterized adequately alongside other fungi using general fungal primers?

Y Lekberg, M Vasar, LS Bullington, SK Sepp… - New Phytologist, 2018 - JSTOR
Background High throughput sequencing has revolutionized microbial ecology. We now
have the ability to characterize both prokaryotic and eukaryotic microbial communities more …

Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities

AL Bazzicalupo, M Balint, I Schmitt - Fungal Ecology, 2013 - Elsevier
Next-generation amplicon sequencing is a powerful tool in ecological studies of fungi.
Technological development suggests that short fragment high-throughput techniques, eg …

Phyllosphere fungal communities differentiate more thoroughly than bacterial communities along an elevation gradient

C Vacher, T Cordier, J Vallance - Microbial ecology, 2016 - Springer
The distance-decay pattern of similarity in ecological communities has been recognized by
ecologists for decades [1]. Such a pattern has been shown for diverse macroorganisms and …

[HTML][HTML] GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

T Větrovský, D Morais, P Kohout, C Lepinay, C Algora… - Scientific Data, 2020 - nature.com
Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition,
symbiotic associations with cultivated and wild plants and pathogenicity. The high …

Future perspectives and challenges of fungal systematics in the age of big data

Z Wang, RH Nilsson, TY James, Y Dai… - Biology of microfungi, 2016 - Springer
Mycological research, especially research on fungal evolution and ecology, requires a
robust and detailed fungal classification and phylogeny to facilitate efficient and informative …