The genus Drosophila as a model for testing tree-and character-based methods of species identification using DNA barcoding

A Yassin, TA Markow, A Narechania… - Molecular Phylogenetics …, 2010 - Elsevier
DNA barcoding has recently been proposed as a promising tool for the (1) rapid assignment
of unknown samples to described species by non-expert workers and (2) a potential method …

Phylogenetic taxonomy in Drosophila: problems and prospects

PM O'Grady, TA Markow - Fly, 2009 - Taylor & Francis
The genus Drosophila is one of the best-studied model systems in modern biology, with
twelve fully sequenced genomes available. In spite of the large number of genetic and …

Whole Genome Sequences of 23 Species from the Drosophila montium Species Group (Diptera: Drosophilidae): A Resource for Testing Evolutionary Hypotheses

MJ Bronski, CC Martinez, HA Weld… - G3: Genes, Genomes …, 2020 - academic.oup.com
Large groups of species with well-defined phylogenies are excellent systems for testing
evolutionary hypotheses. In this paper, we describe the creation of a comparative genomic …

From DNA taxonomy to barcoding–how a vague idea evolved into a biosystematic tool

F Köhler - Zoosystematics and evolution, 2007 - Wiley Online Library
The paper briefly reviews the development of the concept of DNA barcoding, a technique
that proposes to identify species by analysis of short DNA sequences. The differences …

Increasing the data size to accurately reconstruct the phylogenetic relationships between nine subgroups of the Drosophila melanogaster species group …

Y Yang, ZC Hou, YH Qian, H Kang, QT Zeng - Molecular Phylogenetics and …, 2012 - Elsevier
Previous phylogenetic analyses of the melanogaster species group have led to conflicting
hypotheses concerning their relationship; therefore the addition of new sequence data is …

Statistical approaches for DNA barcoding

R Nielsen, M Matz - Systematic biology, 2006 - academic.oup.com
The use of DNA as a tool for species identification has become known as" DNA
barcoding"(Floyd et al., 2002; Hebert et al., 2003; Remigio and Hebert, 2003). The basic …

FlyBase: genomes by the dozen

MA Crosby, JL Goodman, VB Strelets… - Nucleic acids …, 2007 - academic.oup.com
FlyBase () is the primary database of genetic and genomic data for the insect family
Drosophilidae. Historically, Drosophila melanogaster has been the most extensively studied …

Phylogeny of the Genus Drosophila

PM O'Grady, R DeSalle - Genetics, 2018 - academic.oup.com
Understanding phylogenetic relationships among taxa is key to designing and implementing
comparative analyses. The genus Drosophila, which contains over 1600 species, is one of …

The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research

X Song, JL Goicoechea, JSS Ammiraju, M Luo, R He… - Genetics, 2011 - academic.oup.com
The genus Drosophila has been the subject of intense comparative phylogenomics
characterization to provide insights into genome evolution under diverse biological and …

Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes

A Heger, CP Ponting - Genome research, 2007 - genome.cshlp.org
The newly sequenced genome sequences of 11 Drosophila species provide the first
opportunity to investigate variations in evolutionary rates across a clade of closely related …