GWAS meets microarray: are the results of genome-wide association studies and gene-expression profiling consistent? Prostate cancer as an example

IP Gorlov, GE Gallick, OY Gorlova, C Amos… - PLoS …, 2009 - journals.plos.org
Background Genome-wide association studies (GWASs) and global profiling of gene
expression (microarrays) are two major technological breakthroughs that allow hypothesis …

A review of prostate cancer genome-wide association studies (GWAS)

S Benafif, Z Kote-Jarai, RA Eeles - Cancer Epidemiology, Biomarkers & …, 2018 - AACR
Prostate cancer is the most common cancer in men in Europe and the United States. The
genetic heritability of prostate cancer is contributed to by both rarely occurring genetic …

Comprehensive assessment and network analysis of the emerging genetic susceptibility landscape of prostate cancer

C Hicks, L Miele, T Koganti… - Cancer …, 2013 - journals.sagepub.com
Background Recent advances in high-throughput genotyping have made possible
identification of genetic variants associated with increased risk of developing prostate …

Genome-wide association studies on prostate cancer: the end or the beginning?

R Chen, S Ren, Y Sun - Protein & cell, 2013 - Springer
Prostate cancer (PCa) is the second most frequently diagnosed malignancy in men.
Genome-wide association studies (GWAS) has been highly successful in discovering …

Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer

P Jia, Y Liu, Z Zhao - BMC systems biology, 2012 - Springer
Background Pathway analysis of large-scale omics data assists us with the examination of
the cumulative effects of multiple functionally related genes, which are difficult to detect …

Comprehensive functional annotation of 77 prostate cancer risk loci

DJ Hazelett, SK Rhie, M Gaddis, C Yan… - PLoS …, 2014 - journals.plos.org
Genome-wide association studies (GWAS) have revolutionized the field of cancer genetics,
but the causal links between increased genetic risk and onset/progression of disease …

[HTML][HTML] Top associated SNPs in prostate cancer are significantly enriched in cis-expression quantitative trait loci and at transcription factor binding sites

J Jiang, P Jia, B Shen, Z Zhao - Oncotarget, 2014 - ncbi.nlm.nih.gov
While genome-wide association studies (GWAS) have revealed thousands of disease risk
single nucleotide polymorphisms (SNPs), their functions remain largely unknown. Recent …

Characterizing associations and SNP-environment interactions for GWAS-identified prostate cancer risk markers—results from BPC3

S Lindstrom, F Schumacher, A Siddiq, RC Travis… - PloS one, 2011 - journals.plos.org
Genome-wide association studies (GWAS) have identified multiple single nucleotide
polymorphisms (SNPs) associated with prostate cancer risk. However, whether these …

Functional annotation of risk loci identified through genome‐wide association studies for prostate cancer

Y Lu, Z Zhang, H Yu, SL Zheng, WB Isaacs, J Xu… - The …, 2011 - Wiley Online Library
BACKGROUND The majority of established prostate cancer (PCa) risk‐associated single
nucleotide polymorphisms (SNPs) identified from genome‐wide association studies do not …

In Silico Functional Pathway Annotation of 86 Established Prostate Cancer Risk Variants

LWM Loo, AYW Fong, I Cheng, L Le Marchand - Plos one, 2015 - journals.plos.org
Heritability is one of the strongest risk factors of prostate cancer, emphasizing the
importance of the genetic contribution towards prostate cancer risk. To date, 86 established …