Defining “mutation” and “polymorphism” in the era of personal genomics
Background The growing advances in DNA sequencing tools have made analyzing the
human genome cheaper and faster. While such analyses are intended to identify complex …
human genome cheaper and faster. While such analyses are intended to identify complex …
[HTML][HTML] American College of Medical Genetics and Genomics: standards and guidelines for documenting suspected consanguinity as an incidental finding of genomic …
CW Rehder, KL David, B Hirsch, HV Toriello… - Genetics in …, 2013 - Elsevier
Genomic testing, including single-nucleotide polymorphism–based microarrays and whole-
genome sequencing, can detect long stretches of the genome that display homozygosity …
genome sequencing, can detect long stretches of the genome that display homozygosity …
VisCap: inference and visualization of germ-line copy-number variants from targeted clinical sequencing data
TJ Pugh, SS Amr, MJ Bowser, S Gowrisankar… - Genetics in …, 2016 - nature.com
Purpose: To develop and validate VisCap, a software program targeted to clinical
laboratories for inference and visualization of germ-line copy-number variants (CNVs) from …
laboratories for inference and visualization of germ-line copy-number variants (CNVs) from …
[HTML][HTML] Medical genomics: The intricate path from genetic variant identification to clinical interpretation
B Quintáns, A Ordóñez-Ugalde, P Cacheiro… - Applied & translational …, 2014 - Elsevier
The field of medical genomics involves translating high throughput genetic methods to the
clinic, in order to improve diagnostic efficiency and treatment decision making. Technical …
clinic, in order to improve diagnostic efficiency and treatment decision making. Technical …
Assembling and validating bioinformatic pipelines for next-generation sequencing clinical assays
JA SoRelle, M Wachsmann… - Archives of pathology …, 2020 - meridian.allenpress.com
Context.—Clinical next-generation sequencing (NGS) is being rapidly adopted, but analysis
and interpretation of large data sets prompt new challenges for a clinical laboratory setting …
and interpretation of large data sets prompt new challenges for a clinical laboratory setting …
Assessment of incidental findings in 232 whole-exome sequences from the Baylor–Hopkins Center for Mendelian Genomics
J Jurgens, H Ling, K Hetrick, E Pugh… - Genetics in …, 2015 - nature.com
Purpose: In March 2013 the American College of Medical Genetics and Genomics published
a list of 56 genes with the recommendation that pathogenic and likely pathogenic variants …
a list of 56 genes with the recommendation that pathogenic and likely pathogenic variants …
Next-generation sequencing: impact of exome sequencing in characterizing Mendelian disorders
Traditional approaches for gene mapping from candidate gene studies to positional cloning
strategies have been applied for Mendelian disorders. Since 2005, next-generation …
strategies have been applied for Mendelian disorders. Since 2005, next-generation …
Underdiagnoses resulting from variant misinterpretation: time for systematic reanalysis of whole exome data?
F Al-Murshedi, D Meftah, P Scott - European Journal of Medical Genetics, 2019 - Elsevier
Background Clinical whole exome sequencing (WES) yields a diagnosis in approximately
30% of patients evaluated for presumed genetic disorders. For unsolved cases, periodic …
30% of patients evaluated for presumed genetic disorders. For unsolved cases, periodic …
Challenges in the diagnosis and discovery of rare genetic disorders using contemporary sequencing technologies
Next generation sequencing (NGS) has revolutionised rare disease diagnostics.
Concomitant with advancing technologies has been a rise in the number of new gene …
Concomitant with advancing technologies has been a rise in the number of new gene …
Description and pilot results from a novel method for evaluating return of incidental findings from next-generation sequencing technologies
KAB Goddard, EP Whitlock, JS Berg, MS Williams… - Genetics in …, 2013 - nature.com
Purpose: The aim of this study was to develop, operationalize, and pilot test a transparent,
reproducible, and evidence-informed method to determine when to report incidental findings …
reproducible, and evidence-informed method to determine when to report incidental findings …