Defining “mutation” and “polymorphism” in the era of personal genomics

R Karki, D Pandya, RC Elston, C Ferlini - BMC medical genomics, 2015 - Springer
Background The growing advances in DNA sequencing tools have made analyzing the
human genome cheaper and faster. While such analyses are intended to identify complex …

[HTML][HTML] American College of Medical Genetics and Genomics: standards and guidelines for documenting suspected consanguinity as an incidental finding of genomic …

CW Rehder, KL David, B Hirsch, HV Toriello… - Genetics in …, 2013 - Elsevier
Genomic testing, including single-nucleotide polymorphism–based microarrays and whole-
genome sequencing, can detect long stretches of the genome that display homozygosity …

VisCap: inference and visualization of germ-line copy-number variants from targeted clinical sequencing data

TJ Pugh, SS Amr, MJ Bowser, S Gowrisankar… - Genetics in …, 2016 - nature.com
Purpose: To develop and validate VisCap, a software program targeted to clinical
laboratories for inference and visualization of germ-line copy-number variants (CNVs) from …

[HTML][HTML] Medical genomics: The intricate path from genetic variant identification to clinical interpretation

B Quintáns, A Ordóñez-Ugalde, P Cacheiro… - Applied & translational …, 2014 - Elsevier
The field of medical genomics involves translating high throughput genetic methods to the
clinic, in order to improve diagnostic efficiency and treatment decision making. Technical …

Assembling and validating bioinformatic pipelines for next-generation sequencing clinical assays

JA SoRelle, M Wachsmann… - Archives of pathology …, 2020 - meridian.allenpress.com
Context.—Clinical next-generation sequencing (NGS) is being rapidly adopted, but analysis
and interpretation of large data sets prompt new challenges for a clinical laboratory setting …

Assessment of incidental findings in 232 whole-exome sequences from the Baylor–Hopkins Center for Mendelian Genomics

J Jurgens, H Ling, K Hetrick, E Pugh… - Genetics in …, 2015 - nature.com
Purpose: In March 2013 the American College of Medical Genetics and Genomics published
a list of 56 genes with the recommendation that pathogenic and likely pathogenic variants …

Next-generation sequencing: impact of exome sequencing in characterizing Mendelian disorders

B Rabbani, N Mahdieh, K Hosomichi… - Journal of human …, 2012 - nature.com
Traditional approaches for gene mapping from candidate gene studies to positional cloning
strategies have been applied for Mendelian disorders. Since 2005, next-generation …

Underdiagnoses resulting from variant misinterpretation: time for systematic reanalysis of whole exome data?

F Al-Murshedi, D Meftah, P Scott - European Journal of Medical Genetics, 2019 - Elsevier
Background Clinical whole exome sequencing (WES) yields a diagnosis in approximately
30% of patients evaluated for presumed genetic disorders. For unsolved cases, periodic …

Challenges in the diagnosis and discovery of rare genetic disorders using contemporary sequencing technologies

EG Seaby, S Ennis - Briefings in functional genomics, 2020 - academic.oup.com
Next generation sequencing (NGS) has revolutionised rare disease diagnostics.
Concomitant with advancing technologies has been a rise in the number of new gene …

Description and pilot results from a novel method for evaluating return of incidental findings from next-generation sequencing technologies

KAB Goddard, EP Whitlock, JS Berg, MS Williams… - Genetics in …, 2013 - nature.com
Purpose: The aim of this study was to develop, operationalize, and pilot test a transparent,
reproducible, and evidence-informed method to determine when to report incidental findings …