Comparative fungal community analyses using metatranscriptomics and internal transcribed spacer amplicon sequencing from Norway spruce
AN Schneider, J Sundh, G Sundström, K Richau… - Msystems, 2021 - Am Soc Microbiol
The health, growth, and fitness of boreal forest trees are impacted and improved by their
associated microbiomes. Microbial gene expression and functional activity can be assayed …
associated microbiomes. Microbial gene expression and functional activity can be assayed …
Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)
N Delhomme, G Sundström, N Zamani, H Lantz… - PLoS …, 2015 - journals.plos.org
After performing de novo transcript assembly of> 1 billion RNA-Sequencing reads obtained
from 22 samples of different Norway spruce (Picea abies) tissues that were not surface …
from 22 samples of different Norway spruce (Picea abies) tissues that were not surface …
Prospects and challenges for fungal metatranscriptomics of complex communities
The ability to extract and purify messenger RNA directly from plants, decomposing organic
matter and soil, followed by high-throughput sequencing of the pool of expressed genes …
matter and soil, followed by high-throughput sequencing of the pool of expressed genes …
[HTML][HTML] Microbial community response to growing season and plant nutrient optimisation in a boreal Norway spruce forest
Interactions between Norway spruce trees and bacteria and fungi in nutrient limited boreal
forests can be beneficial for tree growth and fitness. Tree-level effects of anthropogenic …
forests can be beneficial for tree growth and fitness. Tree-level effects of anthropogenic …
RNA‐based analyses reveal fungal communities structured by a senescence gradient in the moss Dicranum scoparium and the presence of putative multi‐trophic …
Diverse plant‐associated fungi are thought to have symbiotrophic and saprotrophic states
because they can be isolated from both dead and living plant tissues. However, such tissues …
because they can be isolated from both dead and living plant tissues. However, such tissues …
Belowground fungal community diversity and composition associated with Norway spruce along an altitudinal gradient
Altitudinal gradients provide valuable information about the effects of environmental
variables on changes in species richness and composition as well as the distribution of …
variables on changes in species richness and composition as well as the distribution of …
[HTML][HTML] Habitat and tree species identity shape aboveground and belowground fungal communities in central European forests
B Hofmann, L Dreyling, F Dal Grande, J Otte… - Frontiers in …, 2023 - frontiersin.org
Introduction Trees interact with fungi in mutualistic, saprotrophic, and pathogenic
relationships. With their extensive aboveground and belowground structures, trees provide …
relationships. With their extensive aboveground and belowground structures, trees provide …
High-throughput sequencing shows high fungal diversity and community segregation in the rhizospheres of container-grown conifer seedlings
Forest nurseries in Sweden produce ca. 360 million seedlings of Pinus sylvestris L. and
Picea abies (L.) Karst. annually. Fungi represent the largest microbial component in …
Picea abies (L.) Karst. annually. Fungi represent the largest microbial component in …
Metatranscriptomics as a tool to identify fungal species and subspecies in mixed communities–a proof of concept under laboratory conditions
High-throughput sequencing (HTS) enables the generation of large amounts of genome
sequence data at a reasonable cost. Organisms in mixed microbial communities can now be …
sequence data at a reasonable cost. Organisms in mixed microbial communities can now be …
Metatranscriptomics reveals unsuspected protistan diversity in leaf litter across temperate beech forests, with Amoebozoa the dominating lineage
C Voss, AM Fiore-Donno, MA Guerreiro… - FEMS Microbiology …, 2019 - academic.oup.com
Forest litter harbors complex networks of microorganisms whose major components are
bacteria, fungi and protists. Protists, being highly selective consumers of bacteria and fungi …
bacteria, fungi and protists. Protists, being highly selective consumers of bacteria and fungi …