Methods for prediction of peptide binding to MHC molecules: a comparative study
Background A variety of methods for prediction of peptide binding to major histocompatibility
complex (MHC) have been proposed. These methods are based on binding motifs, binding …
complex (MHC) have been proposed. These methods are based on binding motifs, binding …
Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools
Background Peptides derived from endogenous antigens can bind to MHC class I
molecules. Those which bind with high affinity can invoke a CD8+ immune response …
molecules. Those which bind with high affinity can invoke a CD8+ immune response …
SVMHC: a server for prediction of MHC-binding peptides
P Dönnes, O Kohlbacher - Nucleic acids research, 2006 - academic.oup.com
Identification of MHC-binding peptides is a prerequisite in rational design of T-cell based
peptide vaccines. During the past decade a number of computational approaches have …
peptide vaccines. During the past decade a number of computational approaches have …
[HTML][HTML] Two complementary methods for predicting peptides binding major histocompatibility complex molecules
Peptides that bind to major histocompatibility complex products (MHC) are known to exhibit
certain sequence motifs which, though common, are neither necessary nor sufficient for …
certain sequence motifs which, though common, are neither necessary nor sufficient for …
Methods and protocols for prediction of immunogenic epitopes
JC Tong, TW Tan, S Ranganathan - Briefings in Bioinformatics, 2007 - academic.oup.com
T-cell recognition of peptide/major histocompatibility complex (MHC) is a prerequisite for
cellular immunity. Recently, there has been an influx of bioinformatics tools to facilitate the …
cellular immunity. Recently, there has been an influx of bioinformatics tools to facilitate the …
Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research
Background Protein antigens and their specific epitopes are formulation targets for epitope-
based vaccines. A number of prediction servers are available for identification of peptides …
based vaccines. A number of prediction servers are available for identification of peptides …
Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network.
V Brusic, G Rudy, G Honeyman… - Bioinformatics …, 1998 - academic.oup.com
MOTIVATION: Prediction methods for identifying binding peptides could minimize the
number of peptides required to be synthesized and assayed, and thereby facilitate the …
number of peptides required to be synthesized and assayed, and thereby facilitate the …
Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties
Peptide binding to MHC is critical for antigen recognition by T-cells. To facilitate vaccine
design, computational methods have been developed for predicting MHC-binding peptides …
design, computational methods have been developed for predicting MHC-binding peptides …
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers
Several accurate prediction systems have been developed for prediction of class I major
histocompatibility complex (MHC): peptide binding. Most of these are trained on binding …
histocompatibility complex (MHC): peptide binding. Most of these are trained on binding …
Computational methods for prediction of T-cell epitopes—a framework for modelling, testing, and applications
V Brusic, VB Bajic, N Petrovsky - Methods, 2004 - Elsevier
Computational models complement laboratory experimentation for efficient identification of
MHC-binding peptides and T-cell epitopes. Methods for prediction of MHC-binding peptides …
MHC-binding peptides and T-cell epitopes. Methods for prediction of MHC-binding peptides …