Methods for prediction of peptide binding to MHC molecules: a comparative study

K Yu, N Petrovsky, C Schönbach, JLY Koh, V Brusic - Molecular medicine, 2002 - Springer
Background A variety of methods for prediction of peptide binding to major histocompatibility
complex (MHC) have been proposed. These methods are based on binding motifs, binding …

Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools

B Trost, M Bickis, A Kusalik - Immunome research, 2007 - Springer
Background Peptides derived from endogenous antigens can bind to MHC class I
molecules. Those which bind with high affinity can invoke a CD8+ immune response …

SVMHC: a server for prediction of MHC-binding peptides

P Dönnes, O Kohlbacher - Nucleic acids research, 2006 - academic.oup.com
Identification of MHC-binding peptides is a prerequisite in rational design of T-cell based
peptide vaccines. During the past decade a number of computational approaches have …

[HTML][HTML] Two complementary methods for predicting peptides binding major histocompatibility complex molecules

K Gulukota, J Sidney, A Sette, C DeLisi - Journal of molecular biology, 1997 - Elsevier
Peptides that bind to major histocompatibility complex products (MHC) are known to exhibit
certain sequence motifs which, though common, are neither necessary nor sufficient for …

Methods and protocols for prediction of immunogenic epitopes

JC Tong, TW Tan, S Ranganathan - Briefings in Bioinformatics, 2007 - academic.oup.com
T-cell recognition of peptide/major histocompatibility complex (MHC) is a prerequisite for
cellular immunity. Recently, there has been an influx of bioinformatics tools to facilitate the …

Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research

HH Lin, S Ray, S Tongchusak, EL Reinherz, V Brusic - BMC immunology, 2008 - Springer
Background Protein antigens and their specific epitopes are formulation targets for epitope-
based vaccines. A number of prediction servers are available for identification of peptides …

Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network.

V Brusic, G Rudy, G Honeyman… - Bioinformatics …, 1998 - academic.oup.com
MOTIVATION: Prediction methods for identifying binding peptides could minimize the
number of peptides required to be synthesized and assayed, and thereby facilitate the …

Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties

J Cui, LY Han, HH Lin, HL Zhang, ZQ Tang… - Molecular …, 2007 - Elsevier
Peptide binding to MHC is critical for antigen recognition by T-cells. To facilitate vaccine
design, computational methods have been developed for predicting MHC-binding peptides …

Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers

C Lundegaard, O Lund, M Nielsen - Bioinformatics, 2008 - academic.oup.com
Several accurate prediction systems have been developed for prediction of class I major
histocompatibility complex (MHC): peptide binding. Most of these are trained on binding …

Computational methods for prediction of T-cell epitopes—a framework for modelling, testing, and applications

V Brusic, VB Bajic, N Petrovsky - Methods, 2004 - Elsevier
Computational models complement laboratory experimentation for efficient identification of
MHC-binding peptides and T-cell epitopes. Methods for prediction of MHC-binding peptides …