The role of variable DNA tandem repeats in bacterial adaptation

K Zhou, A Aertsen, CW Michiels - FEMS microbiology reviews, 2014 - academic.oup.com
DNA tandem repeats (TRs), also designated as satellite DNA, are inter-or intragenic
nucleotide sequences that are repeated two or more times in a head-to-tail manner …

Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation

R Moxon, C Bayliss, D Hood - Annu. Rev. Genet., 2006 - annualreviews.org
Bacterial pathogens face stringent challenges to their survival because of the many
unpredictable, often precipitate, and dynamic changes that occur in the host environment or …

The impact of insertion sequences on bacterial genome plasticity and adaptability

J Vandecraen, M Chandler, A Aertsen… - Critical reviews in …, 2017 - Taylor & Francis
Transposable elements (TE), small mobile genetic elements unable to exist independently
of the host genome, were initially believed to be exclusively deleterious genomic parasites …

Unstable microsatellite repeats facilitate rapid evolution of coding and regulatory sequences

A Jansen, R Gemayel, KJ Verstrepen - Repetitive DNA, 2012 - karger.com
Tandem repeats are intrinsically highly variable sequences since repeat units are often lost
or gained during replication or following unequal recombination events. Because of their low …

[HTML][HTML] Functional and evolutionary roles of long repeats in prokaryotes

EPC Rocha, A Danchin, A Viari - Research in microbiology, 1999 - Elsevier
Most recently published complete bacterial genomes have revealed unexpectedly high
numbers of long strict repeats. In this article we discuss the various functional and …

Genome‐Wide Fitness and Genetic Interactions Determined by Tn‐seq, a High‐Throughput Massively Parallel Sequencing Method for Microorganisms: Emerging …

T van Opijnen, DW Lazinski… - Current protocols in …, 2015 - Wiley Online Library
The lagging annotation of bacterial genomes and the inherent genetic complexity of many
phenotypes is hindering the discovery of new drug targets and the development of new …

Short-sequence DNA repeats in prokaryotic genomes

A Van Belkum, S Scherer, L Van Alphen… - Microbiology and …, 1998 - Am Soc Microbiol
Short-sequence DNA repeat (SSR) loci can be identified in all eukaryotic and many
prokaryotic genomes. These loci harbor short or long stretches of repeated nucleotide …

Microsatellites in pursuit of microbial genome evolution

AF Saeed, R Wang, S Wang - Frontiers in microbiology, 2016 - frontiersin.org
Microsatellites or short sequence repeats are widespread genetic markers which are
hypermutable 1–6 bp long short nucleotide motifs. Significantly, their applications in …

Horizontal gene transfer and adaptive evolution in bacteria

BJ Arnold, IT Huang, WP Hanage - Nature Reviews Microbiology, 2022 - nature.com
Horizontal gene transfer (HGT) is arguably the most conspicuous feature of bacterial
evolution. Evidence for HGT is found in most bacterial genomes. Although HGT can …

Associations between inverted repeats and the structural evolution of bacterial genomes

G Achaz, E Coissac, P Netter, EPC Rocha - Genetics, 2003 - academic.oup.com
The stability of the structure of bacterial genomes is challenged by recombination events.
Since major rearrangements (ie, inversions) are thought to frequently operate by …