Assembly and interrogation of Alzheimer's disease genetic networks reveal novel regulators of progression

S Aubry, W Shin, JF Crary, R Lefort, YH Qureshi… - PloS one, 2015 - journals.plos.org
Alzheimer's disease (AD) is a complex multifactorial disorder with poorly characterized
pathogenesis. Our understanding of this disease would thus benefit from an approach that …

Integrative genomics approach identifies conserved transcriptomic networks in Alzheimer's disease

S Morabito, E Miyoshi, N Michael… - Human molecular …, 2020 - academic.oup.com
Alzheimer's disease (AD) is a devastating neurological disorder characterized by changes in
cell-type proportions and consequently marked alterations of the transcriptome. Here we use …

Mapping the gene network landscape of Alzheimer's disease through integrating genomics and transcriptomics

SB Rosenthal, H Wang, D Shi, C Liu… - PLOS Computational …, 2022 - journals.plos.org
Integration of multi-omics data with molecular interaction networks enables elucidation of the
pathophysiology of Alzheimer's disease (AD). Using the latest genome-wide association …

Unraveling the mechanistic complexity of Alzheimer's disease through systems biology

JL Rollo, N Banihashemi, F Vafaee, JW Crawford… - Alzheimer's & …, 2016 - Elsevier
Alzheimer's disease (AD) is a complex, multifactorial disease that has reached global
epidemic proportions. The challenge remains to fully identify its underlying molecular …

Systems biology and gene networks in Alzheimer's disease

ZT Wang, CC Tan, L Tan, JT Yu - Neuroscience & Biobehavioral Reviews, 2019 - Elsevier
Gene mining has been a fruitful approach in the study of Alzheimer's disease (AD). As a new
starting point for studying AD, genetic and genomic investigations consistently strive to …

Leveraging existing data sets to generate new insights into Alzheimer's disease biology in specific patient subsets

KD Fowler, JM Funt, MN Artyomov, B Zeskind… - Scientific reports, 2015 - nature.com
To generate new insights into the biology of Alzheimer's Disease (AD), we developed
methods to combine and reuse a wide variety of existing data sets in new ways. We first …

Single-cell network biology characterizes cell type gene regulation for drug repurposing and phenotype prediction in Alzheimer's disease

C Gupta, J Xu, T Jin, S Khullar, X Liu… - PLoS Computational …, 2022 - journals.plos.org
Dysregulation of gene expression in Alzheimer's disease (AD) remains elusive, especially at
the cell type level. Gene regulatory network, a key molecular mechanism linking …

Predictive network analysis identifies JMJD6 and other potential key drivers in Alzheimer's disease

JP Merchant, K Zhu, MYR Henrion, SSA Zaidi… - Communications …, 2023 - nature.com
Despite decades of genetic studies on late-onset Alzheimer's disease, the underlying
molecular mechanisms remain unclear. To better comprehend its complex etiology, we use …

[HTML][HTML] A multi-network approach identifies protein-specific co-expression in asymptomatic and symptomatic Alzheimer's disease

NT Seyfried, EB Dammer, V Swarup, D Nandakumar… - Cell systems, 2017 - cell.com
Here, we report proteomic analyses of 129 human cortical tissues to define changes
associated with the asymptomatic and symptomatic stages of Alzheimer's disease (AD) …

Large-scale deep multi-layer analysis of Alzheimer's disease brain reveals strong proteomic disease-related changes not observed at the RNA level

ECB Johnson, EK Carter, EB Dammer, DM Duong… - Nature …, 2022 - nature.com
The biological processes that are disrupted in the Alzheimer's disease (AD) brain remain
incompletely understood. In this study, we analyzed the proteomes of more than 1,000 brain …