Covalent protein modification: the current landscape of residue-specific electrophiles

DA Shannon, E Weerapana - Current opinion in chemical biology, 2015 - Elsevier
Highlights•Electrophiles can show distinct amino-acid selectivities in proteomes.•The
judicious selection of an electrophile is critical to various chemical-proteomic applications.•A …

Disparate proteome reactivity profiles of carbon electrophiles

E Weerapana, GM Simon, BF Cravatt - Nature chemical biology, 2008 - nature.com
Insights into the proteome reactivity of electrophiles are crucial for designing activity-based
probes for enzymes lacking cognate affinity labels. Here, we show that different classes of …

Investigating the proteome reactivity and selectivity of aryl halides

DA Shannon, R Banerjee, ER Webster… - Journal of the …, 2014 - ACS Publications
Protein-reactive electrophiles are critical to chemical proteomic applications including
activity-based protein profiling, site-selective protein modification, and covalent inhibitor …

Chemistry for covalent modification of endogenous/native proteins: from test tubes to complex biological systems

T Tamura, I Hamachi - Journal of the American Chemical Society, 2018 - ACS Publications
Chemical modification of proteins provides powerful tools to realize a broad range of
exciting biological applications, including the development of new classes of …

Chemoselective modification of proteins: hitting the target

IS Carrico - Chemical Society Reviews, 2008 - pubs.rsc.org
The use of synthetic molecules to modulate and track biological events is a central
component of chemical biology. As a result, the precise, covalent modification of …

Global profiling of lysine reactivity and ligandability in the human proteome

SM Hacker, KM Backus, MR Lazear, S Forli… - Nature …, 2017 - nature.com
Nucleophilic amino acids make important contributions to protein function, including
performing key roles in catalysis and serving as sites for post-translational modification …

Profiling the proteome-wide selectivity of diverse electrophiles

PRA Zanon, F Yu, P Musacchio, L Lewald, M Zollo… - 2021 - chemrxiv.org
Targeted covalent inhibitors are powerful entities in drug discovery, but their application has
so far mainly been limited to addressing cysteine residues. The development of cysteine …

Reversible targeting of noncatalytic cysteines with chemically tuned electrophiles

IM Serafimova, MA Pufall, S Krishnan, K Duda… - Nature chemical …, 2012 - nature.com
Targeting noncatalytic cysteine residues with irreversible acrylamide-based inhibitors is a
powerful approach for enhancing pharmacological potency and selectivity. Nevertheless …

A “tag-and-modify” approach to site-selective protein modification

JM Chalker, GJL Bernardes… - Accounts of chemical …, 2011 - ACS Publications
Covalent modification can expand a protein's functional capacity. Fluorescent or radioactive
labeling, for instance, allows imaging of a protein in real time. Labeling with an affinity probe …

Chemoenzymatic methods for site-specific protein modification

D Rabuka - Current opinion in chemical biology, 2010 - Elsevier
In the past decade, numerous chemical technologies have been developed to allow the site-
specific post-translational modification of proteins. Traditionally covalent chemical protein …