Mechanism of inhibition of drug-resistant HIV-1 protease clinical isolates by TMC310911: A molecular dynamics study

S Gupta, S Senapati - Journal of Molecular Structure, 2019 - Elsevier
HIV-1 protease continues to be a major target for therapy against AIDS. Although there are
ten FDA approved drugs available, long term use of these drugs elicit drug resistant …

Investigating potency of TMC-126 against wild-type and mutant variants of HIV-1 protease: a molecular dynamics and free energy study

MF Sk, S Haridev, R Roy, P Kar - SAR and QSAR in Environmental …, 2021 - Taylor & Francis
ABSTRACT A detailed computational study was performed to investigate the conformational
changes of flap region and the mechanism underlying the binding of the inhibitor TMC-126 …

Exploring the drug resistance of V32I and M46L mutant HIV-1 protease to inhibitor TMC114: flap dynamics and binding mechanism

BR Meher, Y Wang - Journal of Molecular Graphics and Modelling, 2015 - Elsevier
Inhibitors of HIV-1 protease (HIV-1-pr) generally only bind to the active site of the protease.
However, for some mutants such as V32I and M46L the TMC114 can bind not only to the …

Insights into drug resistance of mutations D30N and I50V to HIV-1 protease inhibitor TMC-114: free energy calculation and molecular dynamic simulation

J Chen, S Zhang, X Liu, Q Zhang - Journal of molecular modeling, 2010 - Springer
The single mutations D30N and I50V are considered as the key residue mutations of the HIV-
1 protease drug resistance to inhibitors in clinical use. In this work, molecular dynamics (MD) …

Ultra-high resolution crystal structure of HIV-1 protease mutant reveals two binding sites for clinical inhibitor TMC114

AY Kovalevsky, F Liu, S Leshchenko, AK Ghosh… - Journal of molecular …, 2006 - Elsevier
TMC114 (darunavir) is a promising clinical inhibitor of HIV-1 protease (PR) for treatment of
drug resistant HIV/AIDS. We report the ultra-high 0.84 Å resolution crystal structure of the …

HIV-1 protease with 10 lopinavir and darunavir resistance mutations exhibits altered inhibition, structural rearrangements and extreme dynamics

A Wong-Sam, YF Wang, DW Kneller… - Journal of Molecular …, 2022 - Elsevier
Antiretroviral drug resistance is a therapeutic obstacle for people with HIV. HIV protease
inhibitors darunavir and lopinavir are recommended for resistant infections. We …

Insights into the structural function of the complex of HIV-1 protease with TMC-126: molecular dynamics simulations and free-energy calculations

D Li, JG Han, H Chen, L Li, RN Zhao, G Liu… - Journal of molecular …, 2012 - Springer
The binding properties of the protein–inhibitor complex of human immunodeficiency virus
type 1 (HIV-1) protease with the inhibitor TMC-126 are investigated by combining …

Multi-drug resistance profile of PR20 HIV-1 protease is attributed to distorted conformational and drug binding landscape: molecular dynamics insights

S Chetty, S Bhakat, AJM Martin… - Journal of Biomolecular …, 2016 - Taylor & Francis
The PR20 HIV-1 protease, a variant with 20 mutations, exhibits high levels of multi-drug
resistance; however, to date, there has been no report detailing the impact of these 20 …

Exploring the potency of currently used drugs against HIV-1 protease of subtype D variant by using multiscale simulations

MF Sk, R Roy, P Kar - Journal of Biomolecular Structure and …, 2021 - Taylor & Francis
Acquired immune deficiency syndrome (AIDS) is caused by the human immunodeficiency
virus (HIV), type 1 and 2. Further, the diversity in HIV-1 has given rise to many serotypes and …

Evaluating the potency of HIV‐1 protease drugs to combat resistance

T Hou, WA McLaughlin, W Wang - Proteins: Structure, Function …, 2008 - Wiley Online Library
HIV‐1 protease has been an important drug target for the antiretroviral treatment of HIV
infection. The efficacy of protease drugs is impaired by the rapid emergence of resistant …