Machine learning: its challenges and opportunities in plant system biology
Sequencing technologies are evolving at a rapid pace, enabling the generation of massive
amounts of data in multiple dimensions (eg, genomics, epigenomics, transcriptomic …
amounts of data in multiple dimensions (eg, genomics, epigenomics, transcriptomic …
Machine learning for big data analytics in plants
Rapid advances in high-throughput genomic technology have enabled biology to enter the
era of 'Big Data'(large datasets). The plant science community not only needs to build its …
era of 'Big Data'(large datasets). The plant science community not only needs to build its …
Charting plant gene functions in the multi-omics and single-cell era
T Depuydt, B De Rybel, K Vandepoele - Trends in Plant Science, 2023 - cell.com
Despite the increased access to high-quality plant genome sequences, the set of genes with
a known function remains far from complete. With the advent of novel bulk and single-cell …
a known function remains far from complete. With the advent of novel bulk and single-cell …
Machine learning approaches and their current application in plant molecular biology: A systematic review
Abstract Machine learning (ML) is a field of artificial intelligence that has rapidly emerged in
molecular biology, thus allowing the exploitation of Big Data concepts in plant genomics. In …
molecular biology, thus allowing the exploitation of Big Data concepts in plant genomics. In …
[HTML][HTML] Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data
H Tong, Z Nikoloski - Journal of plant physiology, 2021 - Elsevier
Highly efficient and accurate selection of elite genotypes can lead to dramatic shortening of
the breeding cycle in major crops relevant for sustaining present demands for food, feed …
the breeding cycle in major crops relevant for sustaining present demands for food, feed …
Systematic multi-omics integration (MOI) approach in plant systems biology
Across all facets of biology, the rapid progress in high-throughput data generation has
enabled us to perform multi-omics systems biology research. Transcriptomics, proteomics …
enabled us to perform multi-omics systems biology research. Transcriptomics, proteomics …
Systems biology for crop improvement
In recent years, generation of large‐scale data from genome, transcriptome, proteome,
metabolome, epigenome, and others, has become routine in several plant species. Most of …
metabolome, epigenome, and others, has become routine in several plant species. Most of …
Integrated omics approaches in plant systems biology
Understanding cellular metabolic systems is vital not only for determining the function of
enzymatic genes, but also for elucidating the coordination among various metabolic …
enzymatic genes, but also for elucidating the coordination among various metabolic …
OmicsSuite: a customized and pipelined suite for analysis and visualization of multi-omics big data
With the advancements in high-throughput sequencing technologies such as Illumina,
PacBio, and 10X Genomics platforms, and gas/liquid chromatography-mass spectrometry …
PacBio, and 10X Genomics platforms, and gas/liquid chromatography-mass spectrometry …
Advances in omics and bioinformatics tools for systems analyses of plant functions
K Mochida, K Shinozaki - Plant and Cell Physiology, 2011 - academic.oup.com
Omics and bioinformatics are essential to understanding the molecular systems that underlie
various plant functions. Recent game-changing sequencing technologies have revitalized …
various plant functions. Recent game-changing sequencing technologies have revitalized …