Agent-based modeling in cancer biomedicine: applications and tools for calibration and validation

N Cogno, C Axenie, R Bauer… - Cancer Biology & …, 2024 - Taylor & Francis
Computational models are not just appealing because they can simulate and predict the
development of biological phenomena across multiple spatial and temporal scales, but also …

Agent-based methods facilitate integrative science in cancer

J West, M Robertson-Tessi, ARA Anderson - Trends in cell biology, 2023 - cell.com
In this opinion, we highlight agent-based modeling as a key tool for exploration of cell–cell
and cell–environment interactions that drive cancer progression, therapeutic resistance, and …

Integrating quantitative assays with biologically based mathematical modeling for predictive oncology

AS Kazerouni, M Gadde, A Gardner, DA Hormuth… - Iscience, 2020 - cell.com
We provide an overview on the use of biological assays to calibrate and initialize
mechanism-based models of cancer phenomena. Although artificial intelligence methods …

Simulating cancer growth with multiscale agent-based modeling

Z Wang, JD Butner, R Kerketta, V Cristini… - Seminars in cancer …, 2015 - Elsevier
There have been many techniques developed in recent years to in silico model a variety of
cancer behaviors. Agent-based modeling is a specific discrete-based hybrid modeling …

SMoRe ParS: A novel methodology for bridging modeling modalities and experimental data applied to 3D vascular tumor growth

HV Jain, KA Norton, BB Prado… - Frontiers in Molecular …, 2022 - frontiersin.org
Multiscale systems biology is having an increasingly powerful impact on our understanding
of the interconnected molecular, cellular, and microenvironmental drivers of tumor growth …

Models of models: a translational route for cancer treatment and drug development

LA Ogilvie, A Kovachev, C Wierling, BMH Lange… - Frontiers in …, 2017 - frontiersin.org
Every patient and every disease is different. Each patient therefore requires a personalized
treatment approach. For technical reasons, a personalized approach is feasible for treatment …

Advancing cancer drug development with mechanistic mathematical modeling: bridging the gap between theory and practice

A Kulesza, C Couty, P Lemarre, CJ Thalhauser… - … of Pharmacokinetics and …, 2024 - Springer
Quantitative predictive modeling of cancer growth, progression, and individual response to
therapy is a rapidly growing field. Researchers from mathematical modeling, systems …

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow

J Ozik, N Collier, JM Wozniak, C Macal, C Cockrell… - BMC …, 2018 - Springer
Background Cancer is a complex, multiscale dynamical system, with interactions between
tumor cells and non-cancerous host systems. Therapies act on this combined cancer-host …

A review of cell-based computational modeling in cancer biology

J Metzcar, Y Wang, R Heiland… - JCO clinical cancer …, 2019 - ascopubs.org
Cancer biology involves complex, dynamic interactions between cancer cells and their
tissue microenvironments. Single-cell effects are critical drivers of clinical progression …

Multiscale cancer modeling

TS Deisboeck, Z Wang, P Macklin… - Annual review of …, 2011 - annualreviews.org
Simulating cancer behavior across multiple biological scales in space and time, ie,
multiscale cancer modeling, is increasingly being recognized as a powerful tool to refine …