Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve …

F Grewe, W Guo, EA Gubbels, AK Hansen… - BMC Evolutionary …, 2013 - Springer
Background Plastid genome structure and content is remarkably conserved in land plants.
This widespread conservation has facilitated taxon-rich phylogenetic analyses that have …

Exploring the plastid genome disparity of liverworts

Y Yu, HM Liu, JB Yang, WZ Ma… - … of Systematics and …, 2019 - Wiley Online Library
Sequencing the plastid genomes of land plants provides crucial improvements to our
understanding of the plastome evolution of land plants. Although the number of available …

Comparative analyses of 3,654 plastid genomes unravel insights into evolutionary dynamics and phylogenetic discordance of green plants

T Yang, SK Sahu, L Yang, Y Liu, W Mu, X Liu… - Frontiers in Plant …, 2022 - frontiersin.org
The plastid organelle is essential for many vital cellular processes and the growth and
development of plants. The availability of a large number of complete plastid genomes could …

Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages

KG Karol, K Arumuganathan, JL Boore, AM Duffy… - BMC Evolutionary …, 2010 - Springer
Background Despite considerable progress in our understanding of land plant phylogeny,
several nodes in the green tree of life remain poorly resolved. Furthermore, the bulk of …

The evolution of chloroplast genome structure in ferns

PG Wolf, JM Roper, AM Duffy - Genome, 2010 - cdnsciencepub.com
The plastid genome (plastome) is a rich source of phylogenetic and other comparative data
in plants. Most land plants possess a plastome of similar structure. However, in a major …

Plastid genome structure and phylogenomics of Nymphaeales: conserved gene order and new insights into relationships

M Gruenstaeudl, L Nauheimer, T Borsch - Plant systematics and evolution, 2017 - Springer
The plastid genomes of early-diverging angiosperms were among the first land plant
plastomes investigated. Despite their importance to understanding angiosperm evolution, no …

Plastid genome data provide new insights into the dynamic evolution of the tribe Ampelopsideae (Vitaceae)

L Zhang, Y Meng, D Wang, GH He, JM Zhang, J Wen… - BMC genomics, 2024 - Springer
Abstract Background Ampelopsideae J. Wen & ZL Nie is a small-sized tribe of Vitaceae
Juss., including ca. 47 species from four genera showing a disjunct distribution worldwide …

Structural variation of plastomes provides key insight into the deep phylogeny of ferns

XY Du, LY Kuo, ZY Zuo, DZ Li, JM Lu - Frontiers in Plant Science, 2022 - frontiersin.org
Structural variation of plastid genomes (plastomes), particularly large inversions and gene
losses, can provide key evidence for the deep phylogeny of plants. In this study, we …

Evolution of gymnosperm plastid genomes

SM Chaw, CS Wu, E Sudianto - Advances in botanical research, 2018 - Elsevier
The rapid increase in plastome availability on GenBank has greatly deepened our
understanding of plastomic evolution and plastid phylogenomics in gymnosperms. The …

Plastid genome sequencing, comparative genomics, and phylogenomics: current status and prospects

L Gao, YJ SU, T Wang - Journal of Systematics and Evolution, 2010 - Wiley Online Library
More than 190 plastid genomes have been completely sequenced during the past two
decades due to advances in DNA sequencing technologies. Based on this unprecedented …