Ribosome profiling reveals the translational landscape and allele-specific translational efficiency in rice
XT Zhu, R Zhou, J Che, YY Zheng, MT ul Qamar… - Plant …, 2023 - cell.com
Translational regulation is a critical step in the process of gene expression and governs the
synthesis of proteins from mRNAs. Many studies have revealed translational regulation in …
synthesis of proteins from mRNAs. Many studies have revealed translational regulation in …
Analysis of ribosome-associated mRNAs in rice reveals the importance of transcript size and GC content in translation
D Zhao, JP Hamilton, M Hardigan, D Yin… - G3: Genes …, 2017 - academic.oup.com
Gene expression is controlled at transcriptional and post-transcriptional levels including
decoding of messenger RNA (mRNA) into polypeptides via ribosome-mediated translation …
decoding of messenger RNA (mRNA) into polypeptides via ribosome-mediated translation …
Identifying RNA modifications by direct RNA sequencing reveals complexity of epitranscriptomic dynamics in rice
F Yu, H Qi, L Gao, S Luo… - Genomics …, 2023 - academic.oup.com
Transcriptome analysis based on high-throughput sequencing of a cDNA library has been
widely applied to functional genomic studies. However, the cDNA dependence of most RNA …
widely applied to functional genomic studies. However, the cDNA dependence of most RNA …
The tomato translational landscape revealed by transcriptome assembly and ribosome profiling
Recent applications of translational control in Arabidopsis (Arabidopsis thaliana) highlight
the potential power of manipulating mRNA translation for crop improvement. However, to …
the potential power of manipulating mRNA translation for crop improvement. However, to …
Comparative ribosome profiling reveals distinct translational landscapes of salt-sensitive and-tolerant rice
X Yang, B Song, J Cui, L Wang, S Wang, L Luo, L Gao… - BMC genomics, 2021 - Springer
Background Soil salinization represents a serious threat to global rice production. Although
significant research has been conducted to understand salt stress at the genomic …
significant research has been conducted to understand salt stress at the genomic …
Ribosome profiling in plants: what is not lost in translation?
U Kage, JJ Powell, DM Gardiner… - Journal of Experimental …, 2020 - academic.oup.com
Translation is a highly dynamic cellular process whereby genetic information residing in an
mRNA molecule is converted into a protein that in turn executes specific functions. However …
mRNA molecule is converted into a protein that in turn executes specific functions. However …
Full-length transcript-based proteogenomics of rice improves its genome and proteome annotation
MX Chen, FY Zhu, B Gao, KL Ma, Y Zhang… - Plant …, 2020 - academic.oup.com
Rice (Oryza sativa) molecular breeding has gained considerable attention in recent years,
but inaccurate genome annotation hampers its progress and functional studies of the rice …
but inaccurate genome annotation hampers its progress and functional studies of the rice …
What, where, and how: regulation of translation and the translational landscape in plants
Translation is a crucial step in gene expression and plays a vital role in regulating various
aspects of plant development and environmental responses. It is a dynamic and complex …
aspects of plant development and environmental responses. It is a dynamic and complex …
High resolution RNA‐seq profiling of genes encoding ribosomal proteins across different organs and developmental stages in Arabidopsis thaliana
W Xiong, J Zhang, T Lan, W Kong, X Wang, L Liu… - Plant …, 2021 - Wiley Online Library
In Arabidopsis thaliana, each ribosomal protein (RP) is encoded by a small gene family
consisting of two or more highly homologous paralogues, which results in ribosome …
consisting of two or more highly homologous paralogues, which results in ribosome …
Characterization of the transcriptional divergence between the subspecies of cultivated rice (Oryza sativa)
Background Cultivated rice consists of two subspecies, Indica and Japonica, that exhibit well-
characterized differences at the morphological and genetic levels. However, the differences …
characterized differences at the morphological and genetic levels. However, the differences …