[HTML][HTML] The importance and challenges of in vivo-like enzyme kinetics

K van Eunen, BM Bakker - Perspectives in Science, 2014 - Elsevier
Realistic mathematical models of biochemical pathways require kinetic data that have been
measured under physiological conditions. However, until recently most enzyme-kinetic data …

A microscopic model of enzyme kinetics

R Gentry, L Ye, Y Nemerson - Biophysical journal, 1995 - cell.com
Many in vivo enzymatic processes, such as those of the tissue factor pathway of blood
coagulation, occur in environments with facilitated substrate delivery or enzymes bound to …

Simulation of cellular biochemical system kinetics

DA Beard - Wiley Interdisciplinary Reviews: Systems Biology …, 2011 - Wiley Online Library
The goal of realistically and reliably simulating the biochemical processes underlying
cellular function is achievable through a systematic approach that makes use of the broadest …

Single‐molecule enzymology à la Michaelis–Menten

R Grima, NG Walter, S Schnell - The FEBS journal, 2014 - Wiley Online Library
Over the past 100 years, deterministic rate equations have been successfully used to infer
enzyme‐catalysed reaction mechanisms and to estimate rate constants from reaction …

Evaluation of rate law approximations in bottom-up kinetic models of metabolism

B Du, DC Zielinski, ES Kavvas, A Dräger, J Tan… - BMC systems …, 2016 - Springer
Background The mechanistic description of enzyme kinetics in a dynamic model of
metabolism requires specifying the numerical values of a large number of kinetic …

Efficient and accurate experimental design for enzyme kinetics: Bayesian studies reveal a systematic approach

EF Murphy, SG Gilmour, MJC Crabbe - Journal of biochemical and …, 2003 - Elsevier
In areas such as drug development, clinical diagnosis and biotechnology research,
acquiring details about the kinetic parameters of enzymes is crucial. The correct design of an …

Kinetic modeling of biological systems

H Resat, L Petzold, MF Pettigrew - Computational systems biology, 2009 - Springer
The dynamics of how the constituent components of a natural system interact defines the
spatio-temporal response of the system to stimuli. Modeling the kinetics of the processes that …

Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics

K van Eunen, JAL Kiewiet, HV Westerhoff… - PLoS computational …, 2012 - journals.plos.org
A decade ago, a team of biochemists including two of us, modeled yeast glycolysis and
showed that one of the most studied biochemical pathways could not be quite understood in …

Words of advice: teaching enzyme kinetics

B Srinivasan - The FEBS journal, 2021 - Wiley Online Library
Enzymology is concerned with the study of enzyme structure, function, regulation and
kinetics. It is an interdisciplinary subject that can be treated as an exclusive sphere of …

Simplified yet highly accurate enzyme kinetics for cases of low substrate concentrations

HM Härdin, A Zagaris, K Krab… - The FEBS …, 2009 - Wiley Online Library
Much of enzyme kinetics builds on simplifications enabled by the quasi‐steady‐state
approximation and is highly useful when the concentration of the enzyme is much lower than …