[HTML][HTML] The importance and challenges of in vivo-like enzyme kinetics
K van Eunen, BM Bakker - Perspectives in Science, 2014 - Elsevier
Realistic mathematical models of biochemical pathways require kinetic data that have been
measured under physiological conditions. However, until recently most enzyme-kinetic data …
measured under physiological conditions. However, until recently most enzyme-kinetic data …
A microscopic model of enzyme kinetics
R Gentry, L Ye, Y Nemerson - Biophysical journal, 1995 - cell.com
Many in vivo enzymatic processes, such as those of the tissue factor pathway of blood
coagulation, occur in environments with facilitated substrate delivery or enzymes bound to …
coagulation, occur in environments with facilitated substrate delivery or enzymes bound to …
Simulation of cellular biochemical system kinetics
DA Beard - Wiley Interdisciplinary Reviews: Systems Biology …, 2011 - Wiley Online Library
The goal of realistically and reliably simulating the biochemical processes underlying
cellular function is achievable through a systematic approach that makes use of the broadest …
cellular function is achievable through a systematic approach that makes use of the broadest …
Single‐molecule enzymology à la Michaelis–Menten
Over the past 100 years, deterministic rate equations have been successfully used to infer
enzyme‐catalysed reaction mechanisms and to estimate rate constants from reaction …
enzyme‐catalysed reaction mechanisms and to estimate rate constants from reaction …
Evaluation of rate law approximations in bottom-up kinetic models of metabolism
Background The mechanistic description of enzyme kinetics in a dynamic model of
metabolism requires specifying the numerical values of a large number of kinetic …
metabolism requires specifying the numerical values of a large number of kinetic …
Efficient and accurate experimental design for enzyme kinetics: Bayesian studies reveal a systematic approach
EF Murphy, SG Gilmour, MJC Crabbe - Journal of biochemical and …, 2003 - Elsevier
In areas such as drug development, clinical diagnosis and biotechnology research,
acquiring details about the kinetic parameters of enzymes is crucial. The correct design of an …
acquiring details about the kinetic parameters of enzymes is crucial. The correct design of an …
Kinetic modeling of biological systems
The dynamics of how the constituent components of a natural system interact defines the
spatio-temporal response of the system to stimuli. Modeling the kinetics of the processes that …
spatio-temporal response of the system to stimuli. Modeling the kinetics of the processes that …
Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics
K van Eunen, JAL Kiewiet, HV Westerhoff… - PLoS computational …, 2012 - journals.plos.org
A decade ago, a team of biochemists including two of us, modeled yeast glycolysis and
showed that one of the most studied biochemical pathways could not be quite understood in …
showed that one of the most studied biochemical pathways could not be quite understood in …
Words of advice: teaching enzyme kinetics
B Srinivasan - The FEBS journal, 2021 - Wiley Online Library
Enzymology is concerned with the study of enzyme structure, function, regulation and
kinetics. It is an interdisciplinary subject that can be treated as an exclusive sphere of …
kinetics. It is an interdisciplinary subject that can be treated as an exclusive sphere of …
Simplified yet highly accurate enzyme kinetics for cases of low substrate concentrations
HM Härdin, A Zagaris, K Krab… - The FEBS …, 2009 - Wiley Online Library
Much of enzyme kinetics builds on simplifications enabled by the quasi‐steady‐state
approximation and is highly useful when the concentration of the enzyme is much lower than …
approximation and is highly useful when the concentration of the enzyme is much lower than …