Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity using 500K …

PJ Gardina, KC Lo, W Lee, JK Cowell, Y Turpaz - BMC genomics, 2008 - Springer
Background Genomic hybridization platforms, including BAC-CGH and genotyping arrays,
have been used to estimate chromosome copy number (CN) in tumor samples by detecting …

Comprehensive analysis of loss of heterozygosity events in glioblastoma using the 100K SNP mapping arrays and comparison with copy number abnormalities …

KC Lo, D Bailey, T Burkhardt, P Gardina… - Genes …, 2008 - Wiley Online Library
We have undertaken an extensive high‐resolution analysis of loss of heterozygosity (LOH)
in 30 high grade gliomas using the Affymetrix 100K SNP mapping array. Only 70% of LOH …

Candidate glioblastoma development gene identification using concordance between copy number abnormalities and gene expression level changes

KC Lo, MR Rossi, J LaDuca, DG Hicks… - Genes …, 2007 - Wiley Online Library
Copy number abnormalities (CNAs) in tumor cells are presumed to affect expression levels
of genes located in region of abnormality. To investigate this relationship we have surveyed …

Estimation of parent specific DNA copy number in tumors using high-density genotyping arrays

H Chen, H Xing, NR Zhang - PloS computational biology, 2011 - journals.plos.org
Chromosomal gains and losses comprise an important type of genetic change in tumors,
and can now be assayed using microarray hybridization-based experiments. Most current …

Intratumoral patterns of genomic imbalance in glioblastomas

S Nobusawa, J Lachuer, A Wierinckx, YH Kim… - Brain …, 2010 - Wiley Online Library
Glioblastomas are morphologically and genetically heterogeneous, but little is known about
the regional patterns of genomic imbalance within glioblastomas. We recently established a …

High-resolution global genomic survey of 178 gliomas reveals novel regions of copy number alteration and allelic imbalances

Y Kotliarov, ME Steed, N Christopher, J Walling, Q Su… - Cancer research, 2006 - AACR
Primary brain tumors are the fourth leading cause of cancer mortality in adults under the age
of 54 years and the leading cause of cancer mortality in children in the United States …

[HTML][HTML] Detailed characterization of alterations of chromosomes 7, 9, and 10 in glioblastomas as assessed by single-nucleotide polymorphism arrays

I Crespo, AL Vital, AB Nieto, O Rebelo, H Tão… - The Journal of Molecular …, 2011 - Elsevier
Glioblastomas are cytogenetically heterogeneous tumors that frequently display alterations
of chromosomes 7, 9p, and 10q. We used high-density (500K) single-nucleotide …

Identification of novel genomic markers related to progression to glioblastoma through genomic profiling of 25 primary glioma cell lines

G Roversi, R Pfundt, RF Moroni, I Magnani… - Oncogene, 2006 - nature.com
Identification of genetic copy number changes in glial tumors is of importance in the context
of improved/refined diagnostic, prognostic procedures and therapeutic decision-making. In …

Identification of novel candidate target genes in amplicons of Glioblastoma multiforme tumors detected by expression and CGH microarray profiling

Y Ruano, M Mollejo, T Ribalta, C Fiaño, FI Camacho… - Molecular cancer, 2006 - Springer
Background Conventional cytogenetic and comparative genomic hybridization (CGH)
studies in brain malignancies have shown that glioblastoma multiforme (GBM) is …

Correlation analysis between single-nucleotide polymorphism and expression arrays in gliomas identifies potentially relevant target genes

Y Kotliarov, S Kotliarova, N Charong, A Li, J Walling… - Cancer research, 2009 - AACR
Primary brain tumors are a major cause of cancer mortality in the United States. Therapy for
gliomas, the most common type of primary brain tumors, remains suboptimal. The …