[PDF][PDF] Efficient and accurate quantitative profiling of alternative splicing patterns of any complexity on a laptop
Alternative splicing (AS) is a widespread process underlying the generation of transcriptomic
and proteomic diversity and is frequently misregulated in human disease. Accordingly, an …
and proteomic diversity and is frequently misregulated in human disease. Accordingly, an …
[HTML][HTML] Alternative splicing: Human disease and quantitative analysis from high-throughput sequencing
Alternative splicing contributes to the majority of protein diversity in higher eukaryotes by
allowing one gene to generate multiple distinct protein isoforms. It adds another regulation …
allowing one gene to generate multiple distinct protein isoforms. It adds another regulation …
Leveraging transcript quantification for fast computation of alternative splicing profiles
GP Alamancos, A Pagès, JL Trincado, N Bellora… - Rna, 2015 - rnajournal.cshlp.org
Alternative splicing plays an essential role in many cellular processes and bears major
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …
SpliceTrap: a method to quantify alternative splicing under single cellular conditions
Motivation: Alternative splicing (AS) is a pre-mRNA maturation process leading to the
expression of multiple mRNA variants from the same primary transcript. More than 90% of …
expression of multiple mRNA variants from the same primary transcript. More than 90% of …
IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences
K Vitting-Seerup, A Sandelin - Bioinformatics, 2019 - academic.oup.com
Alternative splicing is an important mechanism involved in health and disease. Recent work
highlights the importance of investigating genome-wide changes in splicing patterns and the …
highlights the importance of investigating genome-wide changes in splicing patterns and the …
Improved methods for RNAseq-based alternative splicing analysis
The robust detection of disease-associated splice events from RNAseq data is challenging
due to the potential confounding effect of gene expression levels and the often limited …
due to the potential confounding effect of gene expression levels and the often limited …
The relationship between alternative splicing and proteomic complexity
BJ Blencowe - Trends in biochemical sciences, 2017 - cell.com
Tress and colleagues proposed that only a minor fraction of splice variants detected in
transcriptome profiling data are translated and, therefore, that most splice variants have little …
transcriptome profiling data are translated and, therefore, that most splice variants have little …
[HTML][HTML] Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues
Alternative splicing is widely recognized for its roles in regulating genes and creating gene
diversity. However, despite many efforts, the repertoire of gene splicing variation is still …
diversity. However, despite many efforts, the repertoire of gene splicing variation is still …
BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments
Y Huang, G Sanguinetti - Genome biology, 2021 - Springer
RNA splicing is an important driver of heterogeneity in single cells through the expression of
alternative transcripts and as a determinant of transcriptional kinetics. However, the intrinsic …
alternative transcripts and as a determinant of transcriptional kinetics. However, the intrinsic …
SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data
Motivation: Understanding the occurrence and regulation of alternative splicing (AS) is a key
task towards explaining the regulatory processes that shape the complex transcriptomes of …
task towards explaining the regulatory processes that shape the complex transcriptomes of …