[PDF][PDF] TASBE: A tool-chain to accelerate synthetic biological engineering

J Beal, R Weiss, D Densmore, A Adler, J Babb… - Proceedings of the 3rd …, 2011 - Citeseer
There is a pressing need for design automation tools for synthetic biology systems.
Compared to electronic circuits, cellular information processing has more complex …

Developments in the tools and methodologies of synthetic biology

R Kelwick, JT MacDonald, AJ Webb… - … in bioengineering and …, 2014 - frontiersin.org
Synthetic biology is principally concerned with the rational design and engineering of
biologically based parts, devices, or systems. However, biological systems are generally …

The synthetic biology open language

C Myers, K Clancy, G Misirli, E Oberortner… - … Methods in Synthetic …, 2015 - Springer
The design and construction of engineered organisms is an emerging new discipline called
synthetic biology and holds considerable promise as a new technological platform. The …

IWBDA 2022: Toward a Modular Future of Synthetic Biology Driven by Bio-Design Automation

A Pandey - ACS Synthetic Biology, 2024 - ACS Publications
Synthetic biology has its roots in designing biological system behavior according to a
desired specification. For the last two decades, researchers have made scientific …

[图书][B] TinkerCell: Computer-Aided Design for Synthetic Biology

D Chandran - 2011 - search.proquest.com
The purpose of this dissertation is to describe and demonstrate a computer-aided design
(CAD) framework for the field of synthetic biology. Synthetic biology is an emerging …

Design automation for synthetic biological systems

D Densmore, S Hassoun - IEEE Design & Test of Computers, 2012 - ieeexplore.ieee.org
Through principled engineering methods, synthetic biology aims to build specialized
biological components that can be modularly composed to create complex systems. This …

[PDF][PDF] Eugene's enriched set of features to design synthetic biological devices

H Huang, E Oberortner, D Densmore, A Kuchinsky - Proc. IWBDA, 2013 - Citeseer
Eugene is a design language to support synthetic biologist in order to construct large and
complex biological devices more accurately. Compared to its original version, Eugene …

Bio-design automation: Nobody said it would be easy

D Densmore - ACS synthetic biology, 2012 - ACS Publications
John F. Kennedy, Rice University, September 12, 1962 “Biology is complex.”“Biology is not
well understood enough to engineer.”“Biology is not ready for design software.” Sound …

Bio-design automation: software+ biology+ robots

DM Densmore, S Bhatia - Trends in biotechnology, 2014 - cell.com
Synthetic biology promises to usher in a new era of scientific innovation and discovery [1].
Applicationsof thistechnology are broad and diverse [2]. Although applications frequently …

Synthetic biology open language (SBOL) version 2.2. 0

RS Cox III, C Madsen, JA McLaughlin… - Journal of integrative …, 2018 - degruyter.com
Synthetic biology builds upon the techniques and successes of genetics, molecular biology,
and metabolic engineering by applying engineering principles to the design of biological …