Phylogenetics of Flowering Plants Based on Combined Analysis of Plastid atpB and rbcL Gene Sequences

V Savolainen, MW Chase, SB Hoot… - Systematic …, 2000 - academic.oup.com
Abstract Following (1) the large-scale molecular phylogeny of seed plants based on plastid
rbcL gene sequences (published in 1993 by Chase et al., Ann. Missouri Bot. Gard. 80: 528 …

Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL

MW Chase, DE Soltis, RG Olmstead, D Morgan… - Annals of the Missouri …, 1993 - JSTOR
We present the results of two exploratory parsimony analyses of DNA sequences from 475
and 499 species of seed plants, respectively, representing all major taxonomic groups. The …

A comparative analysis of whole plastid genomes from the Apiales: expansion and contraction of the inverted repeat, mitochondrial to plastid transfer of DNA, and …

SR Downie, RK Jansen - Systematic Botany, 2015 - ingentaconnect.com
Previous mapping studies have revealed that the frequency and large size of inverted repeat
junction shifts in Apiaceae plastomes are unusual among angiosperms. To further examine …

A decade of progress in plant molecular phylogenetics

V Savolainen, MW Chase - TRENDS in Genetics, 2003 - cell.com
Over the past decade, botanists have produced several thousand phylogenetic analyses
based on molecular data, with particular emphasis on sequencing rbcL, the plastid gene …

[HTML][HTML] Incongruence between gene trees and species trees and phylogenetic signal variation in plastid genes

DJP Goncalves, BB Simpson, EM Ortiz… - Molecular phylogenetics …, 2019 - Elsevier
The current classification of angiosperms is based primarily on concatenated plastid
markers and maximum likelihood (ML) inference. This approach has been justified by the …

Inferring phylogeny at low taxonomic levels: utility of rapidly evolving cpDNA and nuclear ITS loci

ME Mort, JK Archibald, CP Randle… - American Journal of …, 2007 - Wiley Online Library
Plant molecular systematic studies of closely related taxa have relied heavily on sequence
data from nuclear ITS and cpDNA. Positive attributes of using ITS sequence data include the …

Molecular phylogeny of monocotyledons inferred from combined analysis of plastid matK and rbcL gene sequences

MN Tamura, J Yamashita, S Fuse… - Journal of Plant …, 2004 - Springer
Using matK and rbcL sequences (3,269 bp in total) from 113 genera of 45 families, we
conducted a combined analysis to contribute to the understanding of major evolutionary …

[PDF][PDF] An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II

APG Ii - Botanical journal of the Linnean Society, 2003 - plantnetwork.org
During the 1990s, reconstruction of flowering plant phylogeny took a great step forward.
Rapidly accumulating DNA sequences, in particular from the plastid gene rbcL (eg Chase et …

Phylogenetic analysis of green plant rbcL sequences

JR Manhart - Molecular phylogenetics and evolution, 1994 - Elsevier
DNA and derived amino acid sequences of the rbcL gene from selected photosynthetic
bacteria, green algae, bryophytes," fern allies," ferns, and seed plants were used to construct …

Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK

KM Neubig, WM Whitten, BS Carlsward… - Plant Systematics and …, 2009 - Springer
Plastid DNA sequences have been widely used by systematists for reconstructing plant
phylogenies. The utility of any DNA region for phylogenetic analysis is determined by ease …