ppGpp binding to a site at the RNAP-DksA interface accounts for its dramatic effects on transcription initiation during the stringent response
W Ross, P Sanchez-Vazquez, AY Chen, JH Lee… - Molecular cell, 2016 - cell.com
Throughout the bacterial domain, the alarmone ppGpp dramatically reprograms transcription
following nutrient limitation. This" stringent response" is critical for survival and antibiotic …
following nutrient limitation. This" stringent response" is critical for survival and antibiotic …
Structural basis for− 10 promoter element melting by environmentally induced sigma factors
S Campagne, ME Marsh, G Capitani… - Nature structural & …, 2014 - nature.com
Bacterial transcription is controlled by sigma factors, the RNA polymerase subunits that act
as initiation factors. Although a single housekeeping sigma factor enables transcription from …
as initiation factors. Although a single housekeeping sigma factor enables transcription from …
Role of ppGpp in rpoS Stationary-Phase Regulation in Escherichia coli
M Hirsch, T Elliott - Journal of bacteriology, 2002 - Am Soc Microbiol
The bacterial sigma factor RpoS is strongly induced under a variety of stress conditions and
during growth into stationary phase. Here, we used rpoS-lac fusions in Escherichia coli to …
during growth into stationary phase. Here, we used rpoS-lac fusions in Escherichia coli to …
Transcriptional regulation at a distance in bacteria
H Xu, TR Hoover - Current opinion in microbiology, 2001 - Elsevier
Transcriptional enhancers are cis-acting DNA elements that are binding sites for regulatory
proteins and function at large distances from promoter elements to stimulate transcription …
proteins and function at large distances from promoter elements to stimulate transcription …
Transcription initiation at multiple promoters of the pfl gene by E sigma 70-dependent transcription in vitro and heterologous expression in Pseudomonas putida in …
G Sawers, AF Wagner, A Böck - Journal of bacteriology, 1989 - Am Soc Microbiol
In vitro transcription experiments were used to provide further evidence that the gene
encoding pyruvate formate-lyase (EC 2.3. 1.54) from Escherichia coli is transcribed from …
encoding pyruvate formate-lyase (EC 2.3. 1.54) from Escherichia coli is transcribed from …
Activation of the toluene‐responsive regulator XylR causes a transcriptional switch between σ54 and σ70 promoters at the divergent Pr/Ps region of the TOL plasmid
G Bertoni, S Marqués, V De Lorenzo - Molecular microbiology, 1998 - Wiley Online Library
The mechanism by which XylR, the toluene‐responsive activator of the σ54‐dependent Pu
and Ps promoters of the Pseudomonas TOL plasmid pWW0, downregulates its own σ70 …
and Ps promoters of the Pseudomonas TOL plasmid pWW0, downregulates its own σ70 …
The Two-Component Regulatory System senX3-regX3 Regulates Phosphate-Dependent Gene Expression in Mycobacterium smegmatis
RT Glover, J Kriakov, SJ Garforth… - Journal of …, 2007 - Am Soc Microbiol
Phosphate import is required for the growth of mycobacteria and is regulated by
environmental inorganic phosphate (Pi) concentrations, although the mechanism of this …
environmental inorganic phosphate (Pi) concentrations, although the mechanism of this …
Correlating protein footprinting with mutational analysis in the bacterial transcription factor σ54 (σN)
SR Wigneshweraraj, P Casaz, M Buck - Nucleic acids research, 2002 - academic.oup.com
Protein footprints of the enhancer-dependent σ54 protein, upon binding the Escherichia coli
RNA polymerase core enzyme or upon forming closed promoter complexes, identified …
RNA polymerase core enzyme or upon forming closed promoter complexes, identified …
Domain movements of the enhancer-dependent sigma factor drive DNA delivery into the RNA polymerase active site: insights from single molecule studies
Recognition of bacterial promoters is regulated by two distinct classes of sequence-specific
sigma factors, σ70 or σ54, that differ both in their primary sequence and in the requirement of …
sigma factors, σ70 or σ54, that differ both in their primary sequence and in the requirement of …
The Regulatory Functions of σ54 Factor in Phytopathogenic Bacteria
C Yu, F Yang, D Xue, X Wang, H Chen - International Journal of …, 2021 - mdpi.com
σ54 factor (RpoN), a type of transcriptional regulatory factor, is widely found in pathogenic
bacteria. It binds to core RNA polymerase (RNAP) and regulates the transcription of many …
bacteria. It binds to core RNA polymerase (RNAP) and regulates the transcription of many …