Detection of long repeat expansions from PCR-free whole-genome sequence data
E Dolzhenko, JJ Van Vugt, RJ Shaw… - Genome …, 2017 - genome.cshlp.org
Identifying large expansions of short tandem repeats (STRs), such as those that cause
amyotrophic lateral sclerosis (ALS) and fragile X syndrome, is challenging for short-read …
amyotrophic lateral sclerosis (ALS) and fragile X syndrome, is challenging for short-read …
[HTML][HTML] ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data
Repeat expansions are responsible for over 40 monogenic disorders, and undoubtedly
more pathogenic repeat expansions remain to be discovered. Existing methods for detecting …
more pathogenic repeat expansions remain to be discovered. Existing methods for detecting …
[HTML][HTML] Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads
Tandemly repeated DNA is highly mutable and causes at least 31 diseases, but it is hard to
detect pathogenic repeat expansions genome-wide. Here, we report robust detection of …
detect pathogenic repeat expansions genome-wide. Here, we report robust detection of …
[HTML][HTML] Recent advances in the detection of repeat expansions with short-read next-generation sequencing
M Bahlo, MF Bennett, P Degorski, RM Tankard… - …, 2018 - ncbi.nlm.nih.gov
Short tandem repeats (STRs), also known as microsatellites, are commonly defined as
consisting of tandemly repeated nucleotide motifs of 2–6 base pairs in length. STRs appear …
consisting of tandemly repeated nucleotide motifs of 2–6 base pairs in length. STRs appear …
[HTML][HTML] Detecting expansions of tandem repeats in cohorts sequenced with short-read sequencing data
RM Tankard, MF Bennett, P Degorski… - The American Journal of …, 2018 - cell.com
Repeat expansions cause more than 30 inherited disorders, predominantly neurogenetic.
These can present with overlapping clinical phenotypes, making molecular diagnosis …
These can present with overlapping clinical phenotypes, making molecular diagnosis …
Short tandem repeat expansions in sporadic amyotrophic lateral sclerosis and frontotemporal dementia
Pathogenic short tandem repeat (STR) expansions cause over 20 neurodegenerative
diseases. To determine the contribution of STRs in sporadic amyotrophic lateral sclerosis …
diseases. To determine the contribution of STRs in sporadic amyotrophic lateral sclerosis …
[HTML][HTML] Bioinformatics-based identification of expanded repeats: a non-reference intronic pentamer expansion in RFC1 causes CANVAS
Genomic technologies such as next-generation sequencing (NGS) are revolutionizing
molecular diagnostics and clinical medicine. However, these approaches have proven …
molecular diagnostics and clinical medicine. However, these approaches have proven …
[HTML][HTML] Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences
Tandem repeat (TR) expansion is the underlying cause of over 40 neurological disorders.
Long-read sequencing offers an exciting avenue over conventional technologies for …
Long-read sequencing offers an exciting avenue over conventional technologies for …
[HTML][HTML] Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing
Microsatellite expansion, such as trinucleotide repeat expansion (TRE), is known to cause a
number of genetic diseases. Sanger sequencing and next-generation short-read …
number of genetic diseases. Sanger sequencing and next-generation short-read …
[HTML][HTML] STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci
Expansions of short tandem repeats (STRs) cause many rare diseases. Expansion detection
is challenging with short-read DNA sequencing data since supporting reads are often …
is challenging with short-read DNA sequencing data since supporting reads are often …