[HTML][HTML] A new strategy for analyzing time-series data using dynamic networks: identifying prospective biomarkers of hepatocellular carcinoma

X Huang, J Zeng, L Zhou, C Hu, P Yin, X Lin - Scientific reports, 2016 - nature.com
Time-series metabolomics studies can provide insight into the dynamics of disease
development and facilitate the discovery of prospective biomarkers. To improve the …

Identifying critical states of hepatocellular carcinoma based on landscape dynamic network biomarkers

Y Sun, H Zhao, M Wu, J Xu, S Zhu, J Gao - Computational biology and …, 2020 - Elsevier
Hepatocellular carcinoma (HCC) is the major histological form of primary liver cancer. It has
usually reached the disease state once the patient is diagnosed since there are no specific …

A novel analysis method for biomarker identification based on horizontal relationship: identifying potential biomarkers from large-scale hepatocellular carcinoma …

B Su, P Luo, Z Yang, P Yu, Z Li, P Yin, L Zhou… - Analytical and …, 2019 - Springer
Omics techniques develop quickly and have made a great contribution to disease study.
Omics data are usually complex. How to analyze the data and mine important information …

[HTML][HTML] A weighted relative difference accumulation algorithm for dynamic metabolomics data: long-term elevated bile acids are risk factors for hepatocellular …

W Zhang, L Zhou, P Yin, J Wang, X Lu, X Wang… - Scientific reports, 2015 - nature.com
Dynamic metabolomics studies can provide a systematic view of the metabolic trajectory
during disease development and drug treatment and reveal the nature of biological …

[HTML][HTML] A computational method of defining potential biomarkers based on differential sub-networks

X Huang, X Lin, J Zeng, L Wang, P Yin, L Zhou, C Hu… - Scientific Reports, 2017 - nature.com
Analyzing omics data from a network-based perspective can facilitate biomarker discovery.
To improve disease diagnosis and identify prospective information indicating the onset of …

Discovering pathway biomarkers of hepatocellular carcinoma occurrence and development by dynamic network entropy analysis

C Shen, Y Cao, G Qi, J Huang, ZP Liu - Gene, 2023 - Elsevier
Objective Gene expression profiling techniques measure the transcription of thousands of
genes in a parallel manner. With more and more hepatocellular carcinoma (HCC) …

[HTML][HTML] Personalized early-warning signals during progression of human coronary atherosclerosis by landscape dynamic network biomarker

J Ge, C Song, C Zhang, X Liu, J Chen, K Dou, L Chen - Genes, 2020 - mdpi.com
Coronary atherosclerosis is one of the major factors causing cardiovascular diseases.
However, identifying the tipping point (predisease state of disease) and detecting early …

Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis

M Li, T Zeng, R Liu, L Chen - Briefings in bioinformatics, 2014 - academic.oup.com
Identifying early warning signals of critical transitions during disease progression is a key to
achieving early diagnosis of complex diseases. By exploiting rich information of high …

[HTML][HTML] Identifying pre-disease signals before metabolic syndrome in mice by dynamical network biomarkers

K Koizumi, M Oku, S Hayashi, A Inujima, N Shibahara… - Scientific reports, 2019 - nature.com
The establishment of new therapeutic strategies for metabolic syndrome is urgently needed
because metabolic syndrome, which is characterized by several disorders, such as …

Detection for disease tipping points by landscape dynamic network biomarkers

X Liu, X Chang, S Leng, H Tang… - National Science …, 2019 - academic.oup.com
ABSTRACT A new model-free method has been developed and termed the landscape
dynamic network biomarker (l-DNB) methodology. The method is based on bifurcation …