Two‐Stage sampling designs for gene association studies
D Thomas, R Xie… - Genetic Epidemiology: The …, 2004 - Wiley Online Library
We consider two-stage case-control designs for testing associations between single
nucleotide polymorphisms (SNPs) and disease, in which a subsample of subjects is used to …
nucleotide polymorphisms (SNPs) and disease, in which a subsample of subjects is used to …
An evaluation of the performance of tag SNPs derived from HapMap in a Caucasian population
A Montpetit, M Nelis, P Laflamme, R Magi, X Ke… - PLoS …, 2006 - journals.plos.org
The Haplotype Map (HapMap) project recently generated genotype data for more than 1
million single-nucleotide polymorphisms (SNPs) in four population samples. The main …
million single-nucleotide polymorphisms (SNPs) in four population samples. The main …
Software for tag single nucleotide polymorphism selection
DO Stram - Human genomics, 2005 - Springer
This paper reviews the theoretical basis for single nucleotide polymorphism (SNP) tagging
and considers the use of current software made freely available for this task. A distinction …
and considers the use of current software made freely available for this task. A distinction …
A new multimarker test for family‐based association studies
We propose a new multimarker test for family‐based studies in candidate genes. We use
simulations under different genetic models to assess the performance of competing testing …
simulations under different genetic models to assess the performance of competing testing …
[HTML][HTML] Medical applications of haplotype-based SNP maps: learning to walk before we run
E Lai, C Bowman, A Bansal, A Hughes, M Mosteller… - nature genetics, 2002 - nature.com
Ever since Risch and Merikangas 1 introduced the concept of whole-genome association
using single-nucleotide polymorphisms (SNPs) in 1996, the question of how many SNPs …
using single-nucleotide polymorphisms (SNPs) in 1996, the question of how many SNPs …
Identification of the sources of error in allele frequency estimations from pooled DNA indicates an optimal experimental design
BJ Barratt, F Payne, HE Rance, S Nutland… - Annals of human …, 2002 - cambridge.org
Genotyping costs still preclude analysis of a comprehensive SNP map in thousands of
individual subjects in the search for disease susceptibility loci. Allele frequency estimation in …
individual subjects in the search for disease susceptibility loci. Allele frequency estimation in …
Coverage and characteristics of the Affymetrix GeneChip Human Mapping 100K SNP set
Improvements in technology have made it possible to conduct genome-wide association
mapping at costs within reach of academic investigators, and experiments are currently …
mapping at costs within reach of academic investigators, and experiments are currently …
Efficient multilocus association testing for whole genome association studies using localized haplotype clustering
BL Browning, SR Browning - Genetic Epidemiology: The …, 2007 - Wiley Online Library
Whole genome association studies are generating data sets with hundreds of thousands of
markers genotyped on thousands of cases and controls. We show that whole genome …
markers genotyped on thousands of cases and controls. We show that whole genome …