Development of small molecules designed to modulate protein–protein interactions
Protein–protein interactions are ubiquitous, essential to almost all known biological
processes, and offer attractive opportunities for therapeutic intervention. Developing small …
processes, and offer attractive opportunities for therapeutic intervention. Developing small …
Principles and pitfalls in designing site‐directed peptide ligands
AB Edmundson, DL Harris, ZC Fan… - Proteins: Structure …, 1993 - Wiley Online Library
An immunoglobulin light chain dimer with a large generic binding cavity was used as a host
molecule for designing a series of peptide guest ligands. In a screening procedure peptides …
molecule for designing a series of peptide guest ligands. In a screening procedure peptides …
Examination of shape complementarity in docking of Unbound proteins
R Norel, D Petrey, HJ Wolfson… - … : Structure, Function, and …, 1999 - Wiley Online Library
Here we carry out an examination of shape complementarity as a criterion in protein‐protein
docking and binding. Specifically, we examine the quality of shape complementarity as a …
docking and binding. Specifically, we examine the quality of shape complementarity as a …
Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons
We demonstrate in this work that the surface tension, water‐organic solvent, transfer‐free
energies and the thermodynamics of melting of linear alkanes provide fundamental insights …
energies and the thermodynamics of melting of linear alkanes provide fundamental insights …
Sampling and energy evaluation challenges in ligand binding protein design
J Dou, L Doyle, P Jr Greisen, A Schena, H Park… - Protein …, 2017 - Wiley Online Library
The steroid hormone 17α‐hydroxylprogesterone (17‐OHP) is a biomarker for congenital
adrenal hyperplasia and hence there is considerable interest in development of sensors for …
adrenal hyperplasia and hence there is considerable interest in development of sensors for …
Structural motifs at protein‐protein interfaces: Protein cores versus two‐state and three‐state model complexes
The general similarity in the forces governing protein folding and protein-protein
associations has led us to examine the similarity in the architectural motifs between the …
associations has led us to examine the similarity in the architectural motifs between the …
Studies of protein‐protein interfaces: a statistical analysis of the hydrophobic effect
Data sets of 362 structurally nonredundant protein‐protein interfaces and of 57 symmetry‐
related oligomeric interfaces have been used to explore whether the hydrophobic effect that …
related oligomeric interfaces have been used to explore whether the hydrophobic effect that …
Designed protein-protein association
D Grueninger, N Treiber, MOP Ziegler, JWA Koetter… - Science, 2008 - science.org
The analysis of natural contact interfaces between protein subunits and between proteins
has disclosed some general rules governing their association. We have applied these rules …
has disclosed some general rules governing their association. We have applied these rules …
[HTML][HTML] Emerging themes in the computational design of novel enzymes and protein–protein interfaces
SD Khare, SJ Fleishman - FEBS letters, 2013 - Elsevier
Recent years have seen the first applications of computational protein design to generate
novel catalysts, binding pairs of proteins, protein inhibitors, and large oligomeric assemblies …
novel catalysts, binding pairs of proteins, protein inhibitors, and large oligomeric assemblies …
Blind predictions of protein interfaces by docking calculations in CAPRI
MF Lensink, SJ Wodak - Proteins: Structure, Function, and …, 2010 - Wiley Online Library
Reliable prediction of the amino acid residues involved in protein–protein interfaces can
provide valuable insight into protein function, and inform mutagenesis studies, and drug …
provide valuable insight into protein function, and inform mutagenesis studies, and drug …