Natural product discovery through microbial genome mining
The advent of the genomic era has opened up enormous possibilities for the discovery of
new natural products. Also known as specialized metabolites, these compounds produced …
new natural products. Also known as specialized metabolites, these compounds produced …
Strategies for the discovery of new natural products by genome mining
M Zerikly, GL Challis - ChemBioChem, 2009 - Wiley Online Library
New drugs from silent gene clusters: Analysis of genome sequence data has identified
numerous “cryptic” gene clusters encoding novel natural product biosynthetic assembly …
numerous “cryptic” gene clusters encoding novel natural product biosynthetic assembly …
Genomic enzymology: web tools for leveraging protein family sequence–function space and genome context to discover novel functions
JA Gerlt - Biochemistry, 2017 - ACS Publications
The exponentially increasing number of protein and nucleic acid sequences provides
opportunities to discover novel enzymes, metabolic pathways, and metabolites/natural …
opportunities to discover novel enzymes, metabolic pathways, and metabolites/natural …
The natural products atlas: an open access knowledge base for microbial natural products discovery
JA Van Santen, G Jacob, AL Singh, V Aniebok… - ACS central …, 2019 - ACS Publications
Despite rapid evolution in the area of microbial natural products chemistry, there is currently
no open access database containing all microbially produced natural product structures …
no open access database containing all microbially produced natural product structures …
MIBiG 2.0: a repository for biosynthetic gene clusters of known function
SA Kautsar, K Blin, S Shaw… - Nucleic acids …, 2020 - academic.oup.com
Fueled by the explosion of (meta) genomic data, genome mining of specialized metabolites
has become a major technology for drug discovery and studying microbiome ecology. In …
has become a major technology for drug discovery and studying microbiome ecology. In …
BiG-FAM: the biosynthetic gene cluster families database
Computational analysis of biosynthetic gene clusters (BGCs) has revolutionized natural
product discovery by enabling the rapid investigation of secondary metabolic potential within …
product discovery by enabling the rapid investigation of secondary metabolic potential within …
Identification of thiotetronic acid antibiotic biosynthetic pathways by target-directed genome mining
Recent genome sequencing efforts have led to the rapid accumulation of uncharacterized or
“orphaned” secondary metabolic biosynthesis gene clusters (BGCs) in public databases …
“orphaned” secondary metabolic biosynthesis gene clusters (BGCs) in public databases …
The evolution of genome mining in microbes–a review
Covering: 2006 to 2016 The computational mining of genomes has become an important
part in the discovery of novel natural products as drug leads. Thousands of bacterial …
part in the discovery of novel natural products as drug leads. Thousands of bacterial …
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
New bioinformatic tools are needed to analyze the growing volume of DNA sequence data.
This is especially true in the case of secondary metabolite biosynthesis, where the highly …
This is especially true in the case of secondary metabolite biosynthesis, where the highly …
An interpreted atlas of biosynthetic gene clusters from 1,000 fungal genomes
Fungi are prolific producers of natural products, compounds which have had a large societal
impact as pharmaceuticals, mycotoxins, and agrochemicals. Despite the availability of over …
impact as pharmaceuticals, mycotoxins, and agrochemicals. Despite the availability of over …