Natural product discovery through microbial genome mining

E Kenshole, M Herisse, M Michael, SJ Pidot - Current Opinion in Chemical …, 2021 - Elsevier
The advent of the genomic era has opened up enormous possibilities for the discovery of
new natural products. Also known as specialized metabolites, these compounds produced …

Strategies for the discovery of new natural products by genome mining

M Zerikly, GL Challis - ChemBioChem, 2009 - Wiley Online Library
New drugs from silent gene clusters: Analysis of genome sequence data has identified
numerous “cryptic” gene clusters encoding novel natural product biosynthetic assembly …

Genomic enzymology: web tools for leveraging protein family sequence–function space and genome context to discover novel functions

JA Gerlt - Biochemistry, 2017 - ACS Publications
The exponentially increasing number of protein and nucleic acid sequences provides
opportunities to discover novel enzymes, metabolic pathways, and metabolites/natural …

The natural products atlas: an open access knowledge base for microbial natural products discovery

JA Van Santen, G Jacob, AL Singh, V Aniebok… - ACS central …, 2019 - ACS Publications
Despite rapid evolution in the area of microbial natural products chemistry, there is currently
no open access database containing all microbially produced natural product structures …

MIBiG 2.0: a repository for biosynthetic gene clusters of known function

SA Kautsar, K Blin, S Shaw… - Nucleic acids …, 2020 - academic.oup.com
Fueled by the explosion of (meta) genomic data, genome mining of specialized metabolites
has become a major technology for drug discovery and studying microbiome ecology. In …

BiG-FAM: the biosynthetic gene cluster families database

SA Kautsar, K Blin, S Shaw, T Weber… - Nucleic acids …, 2021 - academic.oup.com
Computational analysis of biosynthetic gene clusters (BGCs) has revolutionized natural
product discovery by enabling the rapid investigation of secondary metabolic potential within …

Identification of thiotetronic acid antibiotic biosynthetic pathways by target-directed genome mining

X Tang, J Li, N Millán-Aguiñaga, JJ Zhang… - ACS Chemical …, 2015 - ACS Publications
Recent genome sequencing efforts have led to the rapid accumulation of uncharacterized or
“orphaned” secondary metabolic biosynthesis gene clusters (BGCs) in public databases …

The evolution of genome mining in microbes–a review

N Ziemert, M Alanjary, T Weber - Natural product reports, 2016 - pubs.rsc.org
Covering: 2006 to 2016 The computational mining of genomes has become an important
part in the discovery of novel natural products as drug leads. Thousands of bacterial …

The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity

N Ziemert, S Podell, K Penn, JH Badger, E Allen… - PloS one, 2012 - journals.plos.org
New bioinformatic tools are needed to analyze the growing volume of DNA sequence data.
This is especially true in the case of secondary metabolite biosynthesis, where the highly …

An interpreted atlas of biosynthetic gene clusters from 1,000 fungal genomes

MT Robey, LK Caesar, MT Drott… - Proceedings of the …, 2021 - National Acad Sciences
Fungi are prolific producers of natural products, compounds which have had a large societal
impact as pharmaceuticals, mycotoxins, and agrochemicals. Despite the availability of over …