Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?

BO Bachmann, SG Van Lanen… - Journal of industrial …, 2014 - academic.oup.com
Microbial genome mining is a rapidly developing approach to discover new and novel
secondary metabolites for drug discovery. Many advances have been made in the past …

Mining genomes to illuminate the specialized chemistry of life

MH Medema, T de Rond, BS Moore - Nature Reviews Genetics, 2021 - nature.com
All organisms produce specialized organic molecules, ranging from small volatile chemicals
to large gene-encoded peptides, that have evolved to provide them with diverse cellular and …

Applied evolution: phylogeny-based approaches in natural products research

M Adamek, M Alanjary, N Ziemert - Natural Product Reports, 2019 - pubs.rsc.org
Covering: up to 2019 Phylogenetic methods become increasingly important in natural
product research. The growing amount of genetic data available today is enabling us to infer …

The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters

K Blin, V Pascal Andreu, ELC de los Santos… - Nucleic acids …, 2019 - academic.oup.com
Natural products originating from microorganisms are frequently used in antimicrobial and
anticancer drugs, pesticides, herbicides or fungicides. In the last years, the increasing …

Natural products and the gene cluster revolution

PR Jensen - Trends in microbiology, 2016 - cell.com
Genome sequencing has created unprecedented opportunities for natural-product discovery
and new insight into the diversity and distributions of natural-product biosynthetic gene …

Genetic platforms for heterologous expression of microbial natural products

JJ Zhang, X Tang, BS Moore - Natural product reports, 2019 - pubs.rsc.org
Covering: 2005 up to 2019 Natural products are of paramount importance in human
medicine. Not only are most antibacterial and anticancer drugs derived directly from or …

Mapping gene clusters within arrayed metagenomic libraries to expand the structural diversity of biomedically relevant natural products

JG Owen, BVB Reddy, MA Ternei… - Proceedings of the …, 2013 - National Acad Sciences
Complex microbial ecosystems contain large reservoirs of unexplored biosynthetic diversity.
Here we provide an experimental framework and data analysis tool to facilitate the targeted …

Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes

A Gavriilidou, SA Kautsar, N Zaburannyi, D Krug… - Nature …, 2022 - nature.com
Bacterial specialized metabolites are a proven source of antibiotics and cancer therapies,
but whether we have sampled all the secondary metabolite chemical diversity of cultivated …

Genomes to natural products prediction informatics for secondary metabolomes (PRISM)

MA Skinnider, CA Dejong, PN Rees… - Nucleic acids …, 2015 - academic.oup.com
Microbial natural products are an invaluable source of evolved bioactive small molecules
and pharmaceutical agents. Next-generation and metagenomic sequencing indicates …

Genome mining for drug discovery: progress at the front end

RH Baltz - Journal of Industrial Microbiology and Biotechnology, 2021 - academic.oup.com
Microbial genome mining for drug discovery and development has been accelerating in
recent years, driven by technical advancements in genome sequencing, bioinformatics …