Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria

H Machado, EC Sonnenschein, J Melchiorsen, L Gram - BMC genomics, 2015 - Springer
Background Antibiotic resistance in bacteria spreads quickly, overtaking the pace at which
new compounds are discovered and this emphasizes the immediate need to discover new …

Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species

KR Duncan, M Crüsemann, A Lechner, A Sarkar, J Li… - Chemistry & biology, 2015 - cell.com
Genome sequencing has revealed that bacteria contain many more biosynthetic gene
clusters than predicted based on the number of secondary metabolites discovered to date …

Challenges and triumphs to genomics-based natural product discovery

PR Jensen, KL Chavarria, W Fenical… - Journal of Industrial …, 2014 - academic.oup.com
Genome sequencing is rapidly changing the field of natural products research by providing
opportunities to assess the biosynthetic potential of strains prior to chemical analysis or …

Dissecting bottromycin biosynthesis using comparative untargeted metabolomics

WJK Crone, NM Vior, J Santos‐Aberturas… - Angewandte …, 2016 - Wiley Online Library
Bottromycin A2 is a structurally unique ribosomally synthesized and post‐translationally
modified peptide (RiPP) that possesses potent antibacterial activity towards multidrug …

Metabologenomics: correlation of microbial gene clusters with metabolites drives discovery of a nonribosomal peptide with an unusual amino acid monomer

AW Goering, RA McClure, JR Doroghazi… - ACS central …, 2016 - ACS Publications
For more than half a century the pharmaceutical industry has sifted through natural products
produced by microbes, uncovering new scaffolds and fashioning them into a broad range of …

Mapping microbial response metabolomes for induced natural product discovery

DK Derewacz, BC Covington, JA McLean… - ACS chemical …, 2015 - ACS Publications
Intergeneric microbial interactions may originate a significant fraction of secondary
metabolic gene regulation in nature. Herein, we expose a genomically characterized …

Cryptic or silent? The known unknowns, unknown knowns, and unknown unknowns of secondary metabolism

PA Hoskisson, RF Seipke - MBio, 2020 - Am Soc Microbiol
Microbial natural products, particularly those produced by filamentous Actinobacteria,
underpin the majority of clinically used antibiotics. Unfortunately, only a few new antibiotic …

Discovery of Toxin-Degrading Enzymes with Positive Unlabeled Deep Learning

D Zhang, H Xing, D Liu, M Han, P Cai, H Lin… - ACS …, 2024 - ACS Publications
Identifying functional enzymes for the catalysis of specific biochemical reactions is a major
bottleneck in the de novo design of biosynthesis and biodegradation pathways …

Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome

MF Traxler, JD Watrous, T Alexandrov, PC Dorrestein… - MBio, 2013 - Am Soc Microbiol
Soils host diverse microbial communities that include filamentous actinobacteria
(actinomycetes). These bacteria have been a rich source of useful metabolites, including …

Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage

RV Grindberg, T Ishoey, D Brinza, E Esquenazi… - PloS one, 2011 - journals.plos.org
Filamentous marine cyanobacteria are extraordinarily rich sources of structurally novel,
biomedically relevant natural products. To understand their biosynthetic origins as well as …