Global analysis of the developmental dynamics of Gossypium hirsutum based on strand‐specific transcriptome

L Ma, Y Wang, G Yan, S Wei, D Zhou… - Physiologia …, 2016 - Wiley Online Library
Cotton is an economically important crop that provides both natural fiber and by‐products
such as oil and protein. Its global gene expression could provide insight into the biological …

Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton

K Wang, D Wang, X Zheng, A Qin, J Zhou… - Nature …, 2019 - nature.com
Cotton is an important natural fiber crop, however, its comprehensive and high-resolution
gene map is lacking. Here we integrate four complementary high-throughput techniques …

Transcriptome profiling of Gossypium arboreum during fiber initiation and the genome-wide identification of trihelix transcription factors

H Mo, L Wang, S Ma, D Yu, L Lu, Z Yang, Z Yang, F Li - Gene, 2019 - Elsevier
Cotton fiber initiation is the first step in fiber development, and it determines the yield. Here,
genome-wide transcriptome profiling of Gossypium arboreum was performed to determine …

An insight into the gene expression evolution in Gossypium species based on the leaf transcriptomes

Y Wu, R Sun, T Huan, Y Zhao, D Yu, Y Sun - BMC genomics, 2024 - Springer
Background Gene expression pattern is associated with biological phenotype and is widely
used in exploring gene functions. Its evolution is also crucial in understanding species …

Towards complete deconstruction of cotton transcriptional landscape

F LI - Journal of Cotton Research, 2020 - Springer
Recently, Wang et al. systematically explored the transcription landscape in diploid cotton
Gossypium arboreum. In the study, they integrated four high-throughput sequencing …

Comparative transcriptome analysis of fiber and nonfiber tissues to identify the genes preferentially expressed in fiber development in Gossypium hirsutum

J Yang, L Gao, X Liu, X Zhang, X Wang, Z Wang - Scientific Reports, 2021 - nature.com
Cotton is an important natural fiber crop and economic crop worldwide. The quality of cotton
fiber directly determines the quality of cotton textiles. Identifying cotton fiber development …

The spatio-temporal landscape of the transcriptome and metabolome of cotton fiber cells during their initiation and late development

X Sun, A Qin, X Wang, XY Ge, Z Liu, C Guo, X Yu… - 2022 - researchsquare.com
Cotton fibers develop from epidermal cells in the outer integument of ovules. The regulatory
process underlying fiber cell development has been extensively studied, little is known …

Genome-wide chromatin accessibility landscape and dynamics of transcription factor networks during ovule and fiber development in cotton

Y Bao, Y Wei, Y Liu, J Gao, S Cheng, G Liu, Q You… - BMC biology, 2023 - Springer
Background The development of cotton fiber is regulated by the orchestrated binding of
regulatory proteins to cis-regulatory elements associated with developmental genes. The cis …

Using Genome‐Referenced Expressed Sequence Tag Assembly to Analyze the Origin and Expression Patterns of Gossypium hirsutum Transcripts

X Jin, Q Li, G Xiao, YX Zhu - Journal of integrative plant biology, 2013 - Wiley Online Library
We assembled a total of 297,239 Gossypium hirsutum (Gh, a tetraploid cotton, AADD)
expressed sequence tag (EST) sequences that were available in the National Center for …

[HTML][HTML] Transcriptional and translational landscape fine-tune genome annotation and explores translation control in cotton

G Qanmber, Q You, Z Yang, L Fan, Z Zhang… - Journal of Advanced …, 2024 - Elsevier
Introduction The unavailability of intergenic region annotation in whole genome sequencing
and pan-genomics hinders efforts to enhance crop improvement. Objectives Despite …