MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters
With an ever-increasing amount of (meta) genomic data being deposited in sequence
databases,(meta) genome mining for natural product biosynthetic pathways occupies a …
databases,(meta) genome mining for natural product biosynthetic pathways occupies a …
MIBiG 2.0: a repository for biosynthetic gene clusters of known function
SA Kautsar, K Blin, S Shaw… - Nucleic acids …, 2020 - academic.oup.com
Fueled by the explosion of (meta) genomic data, genome mining of specialized metabolites
has become a major technology for drug discovery and studying microbiome ecology. In …
has become a major technology for drug discovery and studying microbiome ecology. In …
IMG-ABC: a knowledge base to fuel discovery of biosynthetic gene clusters and novel secondary metabolites
M Hadjithomas, IMA Chen, K Chu, A Ratner… - MBio, 2015 - Am Soc Microbiol
In the discovery of secondary metabolites, analysis of sequence data is a promising
exploration path that remains largely underutilized due to the lack of computational platforms …
exploration path that remains largely underutilized due to the lack of computational platforms …
BiG-FAM: the biosynthetic gene cluster families database
Computational analysis of biosynthetic gene clusters (BGCs) has revolutionized natural
product discovery by enabling the rapid investigation of secondary metabolic potential within …
product discovery by enabling the rapid investigation of secondary metabolic potential within …
IMG-ABC v. 5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase
K Palaniappan, IMA Chen, K Chu, A Ratner… - Nucleic acids …, 2020 - academic.oup.com
Microbial secondary metabolism is a reservoir of bioactive compounds of immense
biotechnological and biomedical potential. The biosynthetic machinery responsible for the …
biotechnological and biomedical potential. The biosynthetic machinery responsible for the …
A computational framework to explore large-scale biosynthetic diversity
JC Navarro-Muñoz, N Selem-Mojica… - Nature chemical …, 2020 - nature.com
Genome mining has become a key technology to exploit natural product diversity. Although
initially performed on a single-genome basis, the process is now being scaled up to mine …
initially performed on a single-genome basis, the process is now being scaled up to mine …
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters
Plant specialized metabolites are chemically highly diverse, play key roles in host–microbe
interactions, have important nutritional value in crops and are frequently applied as …
interactions, have important nutritional value in crops and are frequently applied as …
BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters
Background Genome mining for biosynthetic gene clusters (BGCs) has become an integral
part of natural product discovery. The> 200,000 microbial genomes now publicly available …
part of natural product discovery. The> 200,000 microbial genomes now publicly available …
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
M Hadjithomas, IMA Chen, K Chu, J Huang… - Nucleic Acids …, 2017 - academic.oup.com
Secondary metabolites produced by microbes have diverse biological functions, which
makes them a great potential source of biotechnologically relevant compounds with …
makes them a great potential source of biotechnologically relevant compounds with …
[HTML][HTML] CAGECAT: The CompArative GEne Cluster Analysis Toolbox for rapid search and visualisation of homologous gene clusters
Background Co-localized sets of genes that encode specialized functions are common
across microbial genomes and occur in genomes of larger eukaryotes as well. Important …
across microbial genomes and occur in genomes of larger eukaryotes as well. Important …