Rational design strategies for developing synthetic inhibitors of helical protein interfaces

AB Mahon, SE Miller, ST Joy, PS Arora - Protein-protein interactions, 2012 - Springer
Cellular function depends on highly specific interactions between biomolecules (proteins,
RNA, DNA, and carbohydrates). A basic limitation of drug development is the inability of …

End-capped α-helices as modulators of protein function

AB Mahon, PS Arora - Drug Discovery Today: Technologies, 2012 - Elsevier
Examination of complexes of proteins with other biomolecules reveals that proteins tend to
interact with partners via folded subdomains, in which the backbone possesses secondary …

Chimeric single α-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology

G Collu, T Bierig, AS Krebs, S Engilberge, N Varma… - Structure, 2022 - cell.com
Chimeric fusion proteins are essential tools for protein nanotechnology. Non-optimized
protein-protein connections are usually flexible and therefore unsuitable as structural …

κ-helix and the helical lock and key model: a pivotal way of looking at polyproline II

T Meirson, D Bomze, G Markel, AO Samson - Bioinformatics, 2020 - academic.oup.com
Abstract Motivation Polyproline II (PPII) is a common conformation, comparable to α-helix
and β-sheet. PPII, recently termed with a more generic name—κ-helix, adopts a left-handed …

Synthesis and screening of small-molecule α-helix mimetic libraries targeting protein–protein interactions

H Moon, HS Lim - Current opinion in chemical biology, 2015 - Elsevier
Highlights•We highlight recent development of small-molecule α-helix mimetics.•We review
solid-phase synthesis of small-molecule α-helix mimetics.•We highlight HTS methods for the …

[HTML][HTML] A novel mechanism of PKA anchoring revealed by solution structures of anchoring complexes

MG Newlon, M Roy, D Morikis, DW Carr… - The EMBO …, 2001 - embopress.org
The specificity of intracellular signaling events is controlled, in part, by compartmentalization
of protein kinases and phosphatases. The subcellular localization of these enzymes is often …

Structure-Based Optimization of Covalent, Small-Molecule Stabilizers of the 14-3-3σ/ERα Protein–Protein Interaction from Nonselective Fragments

M Konstantinidou, EJ Visser… - Journal of the …, 2023 - ACS Publications
The stabilization of protein–protein interactions (PPIs) has emerged as a promising strategy
in chemical biology and drug discovery. The identification of suitable starting points for …

Modulating mechanical stability of heterodimerization between engineered orthogonal helical domains

M Yu, Z Zhao, Z Chen, S Le, J Yan - Nature communications, 2020 - nature.com
Mechanically stable specific heterodimerization between small protein domains have a wide
scope of applications, from using as a molecular anchorage in single-molecule force …

Molecular recognition in helix-loop-helix and helix-loop-helix-leucine zipper domains: Design of repertoires and selection of high affinity ligands for natural proteins

R Ciarapica, J Rosati, G Cesareni, S Nasi - Journal of Biological Chemistry, 2003 - ASBMB
Helix-loop-helix (HLH) and helix-loop-helix-leucine zipper (HLHZip) are dimerization
domains that mediate selective pairing among members of a large transcription factor family …

Engineering protein stability with atomic precision in a monomeric miniprotein

EG Baker, C Williams, KL Hudson, GJ Bartlett… - Nature chemical …, 2017 - nature.com
Miniproteins simplify the protein-folding problem, allowing the dissection of forces that
stabilize protein structures. Here we describe PPα-Tyr, a designed peptide comprising an α …