A Parallel Coiled-Coil Tetramer with Offset Helices,

J Liu, Y Deng, Q Zheng, CS Cheng, NR Kallenbach… - Biochemistry, 2006 - ACS Publications
Specific helix− helix interactions are fundamental in assembling the native state of proteins
and in protein− protein interfaces. Coiled coils afford a unique model system for elucidating …

The signaling helix: a common functional theme in diverse signaling proteins

V Anantharaman, S Balaji, L Aravind - Biology direct, 2006 - Springer
Background The mechanism by which the signals are transmitted between receptor and
effector domains in multi-domain signaling proteins is poorly understood. Results Using …

Achieving peptide binding specificity and promiscuity by loops: case of the forkhead-associated domain

YM Huang, CA Chang - PloS one, 2014 - journals.plos.org
The regulation of a series of cellular events requires specific protein–protein interactions,
which are usually mediated by modular domains to precisely select a particular sequence …

Probing conformational dynamics to understand kinase inhibition

IR Outhwaite, MA Seeliger - Elife, 2023 - elifesciences.org
Kinase Activity: Probing conformational dynamics to understand kinase inhibition | eLife Skip to
Content eLife logo eLife home page Menu Home Magazine Community About Search Alerts …

ERK positive feedback regulates a widespread network of tyrosine phosphorylation sites across canonical T cell signaling and actin cytoskeletal proteins in Jurkat T …

YA Helou, V Nguyen, SP Beik, AR Salomon - PLoS One, 2013 - journals.plos.org
Competing positive and negative signaling feedback pathways play a critical role in tuning
the sensitivity of T cell receptor activation by creating an ultrasensitive, bistable switch to …

Multi-facial, non-peptidic α-helix mimetics

ME Lanning, S Fletcher - Biology, 2015 - mdpi.com
Biology | Free Full-Text | Multi-Facial, Non-Peptidic α-Helix Mimetics Next Article in Journal The
Impact of Photobleaching on Microarray Analysis Previous Article in Journal The Mucosal …

Linkers in the structural biology of protein–protein interactions

VP Reddy Chichili, V Kumar, J Sivaraman - Protein science, 2013 - Wiley Online Library
Linkers or spacers are short amino acid sequences created in nature to separate multiple
domains in a single protein. Most of them are rigid and function to prohibit unwanted …

Frequency modulation of ERK activation dynamics rewires cell fate

H Ryu, M Chung, M Dobrzyński, D Fey… - Molecular systems …, 2016 - embopress.org
Cover: This month s cover highlights the Research Article Pooled-matrix protein
interaction screens using Barcode Fusion Genetics by Nozomu Yachie, Evangelia …

Comparisons of the conformational stability of cyclin-dependent kinase (CDK) 4-interacting ankyrin repeat (AR) proteins

Y Guo, A Mahajan, C Yuan, SH Joo, CM Weghorst… - Biochemistry, 2009 - ACS Publications
Ankyrin repeat (AR) proteins are one of the most abundant repeat protein classes in nature,
and they are involved in numerous physiological processes through mediating …

Expanding the repertoire of an ERK2 recruitment site: cysteine footprinting identifies the D-recruitment site as a mediator of Ets-1 binding

O Abramczyk, MA Rainey, R Barnes, L Martin… - Biochemistry, 2007 - ACS Publications
Many substrates of ERK2 contain a D-site, a sequence recognized by ERK2 that is used to
promote catalysis. Despite lacking a canonical D-site, the substrate Ets-1 is displaced from …