Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers

CH Mayr, LM Simon, G Leuschner, M Ansari… - EMBO molecular …, 2021 - embopress.org
The correspondence of cell state changes in diseased organs to peripheral protein
signatures is currently unknown. Here, we generated and integrated single‐cell …

Mapping the proteo-genomic convergence of human diseases

M Pietzner, E Wheeler, J Carrasco-Zanini, A Cortes… - Science, 2021 - science.org
INTRODUCTION Proteins are essential functional units of the human body and represent
the largest class of drug targets. RATIONALE Broad-capture proteomics has the potential to …

Development and validation of a transcriptional signature for the assessment of fibrosis in organs

B Wang, S Chen, H Qian, R Chen, Y He, X Zhang… - MedRxiv, 2020 - medrxiv.org
Background Fibrosis in most organs has proven to be an critical factor related to high risk of
morbidity and mortality, but an adequate assessment of fibrosis severity is still challenging …

Reference-based annotation of single cell transcriptomes identifies a profibrotic macrophage niche after tissue injury

D Aran, AP Looney, L Liu, V Fong, A Hsu, PJ Wolters… - BioRxiv, 2018 - biorxiv.org
Myeloid cells localize to peripheral tissues in a wide range of pathologic contexts. However,
appreciation of distinct myeloid subtypes has been limited by the signal averaging inherent …

An integrative Multiomics framework for identification of therapeutic targets in pulmonary fibrosis

M Arif, A Basu, KM Wolf, JK Park… - Advanced …, 2023 - Wiley Online Library
Pulmonary fibrosis (PF) is a heterogeneous disease with a poor prognosis. Therefore,
identifying additional therapeutic modalities is required to improve outcome. However, the …

Cross-tissue, single-cell stromal atlas identifies shared pathological fibroblast phenotypes in four chronic inflammatory diseases

I Korsunsky, K Wei, M Pohin, EY Kim, F Barone… - Med, 2022 - cell.com
Background Pro-inflammatory fibroblasts are critical for pathogenesis in rheumatoid arthritis,
inflammatory bowel disease, interstitial lung disease, and Sjögren's syndrome and represent …

Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning

Y Liu, N Basty, B Whitcher, JD Bell, EP Sorokin… - Elife, 2021 - elifesciences.org
Cardiometabolic diseases are an increasing global health burden. While socioeconomic,
environmental, behavioural, and genetic risk factors have been identified, a better …

The case for increasing diversity in tissue-based functional genomics datasets to understand human disease susceptibility

E Long, M García-Closas, SJ Chanock… - Nature …, 2022 - nature.com
Tissue-based functional genomics resources including molecular quantitative trait loci
datasets lack diversity in ancestry and tissue types and thus are inadequate for …

Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function

G Eraslan, E Drokhlyansky, S Anand, E Fiskin… - Science, 2022 - science.org
Understanding gene function and regulation in homeostasis and disease requires
knowledge of the cellular and tissue contexts in which genes are expressed. Here, we …

A longitudinal big data approach for precision health

SM Schüssler-Fiorenza Rose, K Contrepois… - Nature medicine, 2019 - nature.com
Precision health relies on the ability to assess disease risk at an individual level, detect early
preclinical conditions and initiate preventive strategies. Recent technological advances in …