[HTML][HTML] Unravelling fibrosis using single-cell transcriptomics
R Dobie, NC Henderson - Current Opinion in Pharmacology, 2019 - Elsevier
Fibrosis, the excessive accumulation of extracellular matrix, is a major global healthcare
burden. Despite major advances in our understanding of the mechanisms regulating …
burden. Despite major advances in our understanding of the mechanisms regulating …
MultiCellDS: a community-developed standard for curating microenvironment-dependent multicellular data
SH Friedman, ARA Anderson, DM Bortz, AG Fletcher… - bioRxiv, 2016 - biorxiv.org
Exchanging and understanding scientific data and their context represents a significant
barrier to advancing research, especially with respect to information siloing. Maintaining …
barrier to advancing research, especially with respect to information siloing. Maintaining …
Integrated spatial multiomics reveals fibroblast fate during tissue repair
In the skin, tissue injury results in fibrosis in the form of scars composed of dense
extracellular matrix deposited by fibroblasts. The therapeutic goal of regenerative wound …
extracellular matrix deposited by fibroblasts. The therapeutic goal of regenerative wound …
Inter-tissue coexpression network analysis reveals DPP4 as an important gene in heart to blood communication
Background Inter-tissue molecular interactions are critical to the function and behavior of
biological systems in multicellular organisms, but systematic studies of interactions between …
biological systems in multicellular organisms, but systematic studies of interactions between …
Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention
Multiomic profiling can reveal population heterogeneity for both health and disease states.
Obesity drives a myriad of metabolic perturbations and is a risk factor for multiple chronic …
Obesity drives a myriad of metabolic perturbations and is a risk factor for multiple chronic …
High-resolution mycobiota analysis reveals dynamic intestinal translocation preceding invasive candidiasis
The intestinal microbiota is a complex community of bacteria, archaea, viruses, protists and
fungi,. Although the composition of bacterial constituents has been linked to immune …
fungi,. Although the composition of bacterial constituents has been linked to immune …
Comprehensive analysis of tissue-wide gene expression and phenotype data reveals tissues affected in rare genetic disorders
Linking putatively pathogenic variants to the tissues they affect is necessary for determining
the correct diagnostic workup and therapeutic regime in undiagnosed patients. Here, we …
the correct diagnostic workup and therapeutic regime in undiagnosed patients. Here, we …
Interrogating mechanisms of liver fibrosis with omics
F Oakley - Nature Reviews Gastroenterology & Hepatology, 2022 - nature.com
Important studies in 2021 demonstrated sophisticated developments in the study of liver
fibrosis through omics. Cell-specific mapping, single-cell sequencing and deep-learning …
fibrosis through omics. Cell-specific mapping, single-cell sequencing and deep-learning …
Multimodal dynamic profiling of healthy and diseased states for future personalized health care
Personalized medicine is rapidly emerging as the future direction in the post–genome
sequencing era. Early applications have concentrated on variant‐based assessment of …
sequencing era. Early applications have concentrated on variant‐based assessment of …
Resolving the fibrotic niche of human liver cirrhosis at single-cell level
P Ramachandran, R Dobie, JR Wilson-Kanamori… - Nature, 2019 - nature.com
Liver cirrhosis is a major cause of death worldwide and is characterized by extensive
fibrosis. There are currently no effective antifibrotic therapies available. To obtain a better …
fibrosis. There are currently no effective antifibrotic therapies available. To obtain a better …