Quantitative analysis of the DNA methylation sensitivity of transcription factor complexes
Although DNA modifications play an important role in gene regulation, the underlying
mechanisms remain elusive. We developed EpiSELEX-seq to probe the sensitivity of …
mechanisms remain elusive. We developed EpiSELEX-seq to probe the sensitivity of …
DNA methylation presents distinct binding sites for human transcription factors
DNA methylation, especially CpG methylation at promoter regions, has been generally
considered as a potent epigenetic modification that prohibits transcription factor (TF) …
considered as a potent epigenetic modification that prohibits transcription factor (TF) …
Measuring quantitative effects of methylation on transcription factor–DNA binding affinity
Z Zuo, B Roy, YK Chang, D Granas, GD Stormo - Science advances, 2017 - science.org
Methylation of CpG (cytosine-phosphate-guanine) dinucleotides is a common epigenetic
mark that influences gene expression. The effects of methylation on transcription factor (TF) …
mark that influences gene expression. The effects of methylation on transcription factor (TF) …
[HTML][HTML] Toward a mechanistic understanding of DNA methylation readout by transcription factors
Epigenetic DNA modification impacts gene expression, but the underlying molecular
mechanisms are only partly understood. Adding a methyl group to a cytosine base locally …
mechanisms are only partly understood. Adding a methyl group to a cytosine base locally …
Transcription factors as readers and effectors of DNA methylation
Recent technological advances have made it possible to decode DNA methylomes at single-
base-pair resolution under various physiological conditions. Many aberrant or differentially …
base-pair resolution under various physiological conditions. Many aberrant or differentially …
Cross-talk between site-specific transcription factors and DNA methylation states
A Blattler, PJ Farnham - Journal of Biological Chemistry, 2013 - ASBMB
DNA methylation, which occurs predominantly at CpG dinucleotides, is a potent epigenetic
repressor of transcription. Because DNA methylation is reversible, there is much interest in …
repressor of transcription. Because DNA methylation is reversible, there is much interest in …
Sensitivity of transcription factors to DNA methylation
Dynamic binding of transcription factors (TFs) to regulatory elements controls transcriptional
states throughout organism development. Epigenetics modifications, such as DNA …
states throughout organism development. Epigenetics modifications, such as DNA …
Dynamics and context-dependent roles of DNA methylation
C Ambrosi, M Manzo, T Baubec - Journal of molecular biology, 2017 - Elsevier
DNA methylation is one of the most extensively studied epigenetic marks. It is involved in
transcriptional gene silencing and plays important roles during mammalian development. Its …
transcriptional gene silencing and plays important roles during mammalian development. Its …
DNA methylation: old dog, new tricks?
CG Spruijt, M Vermeulen - Nature structural & molecular biology, 2014 - nature.com
DNA methylation is an epigenetic modification that is generally associated with repression of
transcription initiation at CpG-island promoters. Here we argue that, on the basis of recent …
transcription initiation at CpG-island promoters. Here we argue that, on the basis of recent …
Effects of cytosine methylation on transcription factor binding sites
Background DNA methylation in promoters is closely linked to downstream gene repression.
However, whether DNA methylation is a cause or a consequence of gene repression …
However, whether DNA methylation is a cause or a consequence of gene repression …