[PDF][PDF] Guidance for surveillance of SARS-CoV-2 variants: interim guidance, 9 August 2021

World Health Organization - 2021 - apps.who.int
Background SARS-CoV-2 is an enveloped, positive-sense single-stranded RNA virus with a
30-kilobase genome, which, like all viruses, accumulates nucleotide mutations over time …

SARS-CoV-2 variants of concern in the United States—challenges and opportunities

RP Walensky, HT Walke, AS Fauci - Jama, 2021 - jamanetwork.com
On January 10, 2020, the first genomic sequence of the severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) isolated from a patient in Wuhan, China, was posted online. As …

SARS-CoV-2 viral variants—tackling a moving target

JR Mascola, BS Graham, AS Fauci - Jama, 2021 - jamanetwork.com
In this issue of JAMA, Zhang and colleagues1 report the emergence of a novel severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) variant in Southern California that …

Multiplex SARS-CoV-2 genotyping reverse transcriptase PCR for population-level variant screening and epidemiologic surveillance

H Wang, JA Miller, M Verghese, M Sibai… - Journal of clinical …, 2021 - Am Soc Microbiol
The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants
with concerning phenotypic mutations is of public health interest. Genomic surveillance is an …

[HTML][HTML] Genomic surveillance for SARS-CoV-2 variants circulating in the United States, December 2020–May 2021

P Paul - MMWR. Morbidity and mortality weekly report, 2021 - cdc.gov
CDC's genomic surveillance for SARS-CoV-2 variants generates population-based
estimates of the proportions of variants among all SARS-CoV-2 infections in the United …

An 81-nucleotide deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (January to March 2020)

LRA Holland, EA Kaelin, R Maqsood… - Journal of …, 2020 - Am Soc Microbiol
On 26 January 2020, the first coronavirus disease 2019 (COVID-19) case was reported in
Arizona (third case in the United States)(1). Here, we report on early severe acute …

[HTML][HTML] Early detection and surveillance of the SARS-CoV-2 variant BA. 2.86—worldwide, July–October 2023

AS Lambrou - MMWR. Morbidity and Mortality Weekly Report, 2023 - cdc.gov
Early detection of emerging SARS-CoV-2 variants is critical to guiding rapid risk
assessments, providing clear and timely communication messages, and coordinating public …

SARS-CoV-2 genome sequencing methods differ in their abilities to detect variants from low-viral-load samples

C Lam, K Gray, M Gall, R Sadsad, A Arnott… - Journal of Clinical …, 2021 - Am Soc Microbiol
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genomic surveillance has
been vital in understanding the spread of coronavirus disease 2019 (COVID-19), the …

The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology

BB Oude Munnink, N Worp, DF Nieuwenhuijse… - Nature medicine, 2021 - nature.com
The current coronavirus disease 2019 (COVID-19) pandemic is the first to apply whole-
genome sequencing near to real time, with over 2 million severe acute respiratory syndrome …

[PDF][PDF] Recommendations for national SARS-CoV-2 testing strategies and diagnostic capacities: interim guidance, 25 June 2021

World Health Organization - 2021 - apps.who.int
Background COVID-19 has put enormous demand on laboratory infrastructure and required
an unprecedented rapid scale-up of testing capacity for its causative agent, SARS-CoV-2, at …