[PDF][PDF] Integrated lncRNA function upon genomic and epigenomic regulation

AB Herman, D Tsitsipatis, M Gorospe - Molecular Cell, 2022 - cell.com
Although some long noncoding (lnc) RNAs are known since the 1950s, the past 25 years
have uncovered myriad lncRNAs with diverse sequences, structures, and functions. The …

A CRISPR knockout screen identifies SETDB1-target retroelement silencing factors in embryonic stem cells

K Fukuda, A Okuda, K Yusa, Y Shinkai - Genome research, 2018 - genome.cshlp.org
In mouse embryonic stem cells (mESCs), the expression of provirus and endogenous
retroelements is epigenetically repressed. Although many cellular factors involved in …

[HTML][HTML] Exosomal non-coding RNAs-mediated crosstalk in the tumor microenvironment

Q Chen, Y Li, Y Liu, W Xu, X Zhu - Frontiers in cell and developmental …, 2021 - frontiersin.org
Exosomes are secreted by different types of cells in tumor microenvironment (TME) and
participate in multiple biological processes of tumors. Non-coding RNAs (ncRNAs) …

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

ME Dinger, PP Amaral, TR Mercer, KC Pang… - Genome …, 2008 - genome.cshlp.org
The transcriptional networks that regulate embryonic stem (ES) cell pluripotency and lineage
specification are the subject of considerable attention. To date such studies have focused …

[PDF][PDF] Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming

DH Kim, GK Marinov, S Pepke, ZS Singer, P He… - Cell stem cell, 2015 - cell.com
Cellular reprogramming highlights the epigenetic plasticity of the somatic cell state. Long
noncoding RNAs (lncRNAs) have emerging roles in epigenetic regulation, but their potential …

Cis-and trans-acting lncRNAs in pluripotency and reprogramming

P Yan, S Luo, JY Lu, X Shen - Current opinion in genetics & development, 2017 - Elsevier
Highlights•Cis-and trans-acting lncRNAs are involved in stem cell pluripotency and
reprogramming.•lncRNA-mediated cis regulation of nearby transcription is a prevalent …

Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells

KV Morris - Epigenetics, 2009 - Taylor & Francis
Epigenetic silencing of tumor suppressor gene promoters is one of the most common
observations found in cancer. Despite the plethora of observed epigenetically silenced …

Posttranscriptional gene regulation by long noncoding RNA

JH Yoon, K Abdelmohsen, M Gorospe - Journal of molecular biology, 2013 - Elsevier
Eukaryotic cells transcribe a vast number of noncoding RNA species. Among them, long
noncoding RNAs (lncRNAs) have been widely implicated in the regulation of gene …

Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers

TK Kim, M Hemberg, JM Gray - Cold Spring Harbor …, 2015 - cshperspectives.cshlp.org
Recent studies have revealed that active enhancers are transcribed, producing a class of
noncoding RNAs called enhancer RNAs (eRNAs). eRNAs are distinct from long noncoding …

Co-transcriptional gene regulation in eukaryotes and prokaryotes

M Shine, J Gordon, L Schärfen, D Zigackova… - … Reviews Molecular Cell …, 2024 - nature.com
Many steps of RNA processing occur during transcription by RNA polymerases. Co-
transcriptional activities are deemed commonplace in prokaryotes, in which the lack of …