Molecular interactions of nucleic acid bases. A review of quantum-chemical studies

J Šponer, P Hobza - Collection of Czechoslovak chemical …, 2003 - cccc.uochb.cas.cz
Ab initio quantum-chemical calculations with inclusion of electron correlation significantly
contributed to our understanding of molecular interactions of DNA and RNA bases. Some of …

Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases

J Šponer, J Leszczynski… - … : Original Research on …, 2001 - Wiley Online Library
This review summarizes results concerning molecular interactions of nucleic acid bases as
revealed by advanced ab initio quantum chemical (QM) calculations published in last few …

Hydrogen bonding, stacking and cation binding of DNA bases

J Šponer, J Leszczynski, P Hobza - Journal of Molecular Structure …, 2001 - Elsevier
Ab initio quantum chemical calculations with inclusion of electron correlation effects
significantly contributed to our understanding of molecular interactions of DNA bases. Some …

Hydrogen Bonding and Stacking of DNA Bases: A Review of Quantum-chemical ab initio Studies

J Šponer, J Leszczynski, P Hobza - Journal of Biomolecular …, 1996 - Taylor & Francis
Ab initio quantum-chemical calculations with inclusion of electron correlation made since
1994 (such reliable calculations were not feasible before) significantly modified our view on …

Nature of nucleic acid− base stacking: nonempirical ab initio and empirical potential characterization of 10 stacked base dimers. Comparison of stacked and H …

J Šponer, J Leszczyński, P Hobza - The Journal of Physical …, 1996 - ACS Publications
Ab initio (MP2/6-31G*(0.25)) interaction energies were calculated for almost 240 geometries
of 10 stacked nucleic acid− base pairs: A⊙⊙⊙ A, C⊙⊙⊙ C, G⊙⊙⊙ G, U⊙⊙⊙ U …

Interactions between nucleic acid bases in hydrogen bonded and stacked configurations: the role of the molecular charge distribution

J Langlet, P Claverie, F Caron… - International Journal of …, 1981 - Wiley Online Library
Some aspects of the use of simplified formulas for the evaluation the interaction energy
between two molecules is discussed. This energy is obtained as the sum of four terms …

Structural and electronic property changes of the nucleic acid bases upon base pair formation

R Santamaria, A Vázquez - Journal of computational chemistry, 1994 - Wiley Online Library
A systematic study of structures and electronic properties has been carried out for the
nucleic acid bases adenine, guanine, thymine, and cytosine and for the base pairs adenine …

An analysis of the interactions between nucleic acid bases: Hydrogen-bonded base pairs

RR Toczyłowski, SM Cybulski - The Journal of Physical Chemistry …, 2003 - ACS Publications
Thirty-two nucleic acid hydrogen-bonded base pairs have been examined using second-
order Møller− Plesset perturbation theory (MP2) and the 6-31G*(0.25) and modified aug-cc …

Comment on “Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-theory treatment”[J. Chem. Phys. 114, 5149 (2001)]

SM Cybulski, TM Bledson… - The Journal of chemical …, 2002 - pubs.aip.org
A density-functional-theory (DFT) based treatment for calculating the interaction energies of
nucleic acid base pairs proposed recently by Elstner et al.[J. Chem. Phys. 114, 5149 (2001)] …

Performance of empirical potentials (AMBER, CFF95, CVFF, CHARMM, OPLS, POLTEV), semiempirical quantum chemical methods (AM1, MNDO/M, PM3), and ab …

P Hobza, M Kabeláč, J Šponer… - Journal of …, 1997 - Wiley Online Library
Abstract Empirical energy functions (AMBER 4.1, CFF95, CHARMM23, OPLS, Poltev),
semiempirical quantum chemical methods (AM1, MNDO/M, PM3), and the nonempirical ab …