Mapping and quantifying mammalian transcriptomes by RNA-Seq
A Mortazavi, BA Williams, K McCue, L Schaeffer… - Nature …, 2008 - nature.com
We have mapped and quantified mouse transcriptomes by deeply sequencing them and
recording how frequently each gene is represented in the sequence sample (RNA-Seq) …
recording how frequently each gene is represented in the sequence sample (RNA-Seq) …
Universal alternative splicing of noncoding exons
The human transcriptome is so large, diverse, and dynamic that, even after a decade of
investigation by RNA sequencing (RNA-seq), we have yet to resolve its true dimensions …
investigation by RNA sequencing (RNA-seq), we have yet to resolve its true dimensions …
Spliced synthetic genes as internal controls in RNA sequencing experiments
RNA sequencing (RNA-seq) can be used to assemble spliced isoforms, quantify expressed
genes and provide a global profile of the transcriptome. However, the size and diversity of …
genes and provide a global profile of the transcriptome. However, the size and diversity of …
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
The functional complexity of the human transcriptome is not yet fully elucidated. We report a
high-throughput sequence of the human transcriptome from a human embryonic kidney and …
high-throughput sequence of the human transcriptome from a human embryonic kidney and …
Direct RNA sequencing
F Ozsolak, AR Platt, DR Jones, JG Reifenberger… - Nature, 2009 - nature.com
Our understanding of human biology and disease is ultimately dependent on a complete
understanding of the genome and its functions. The recent application of microarray and …
understanding of the genome and its functions. The recent application of microarray and …
Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing
We compared quantitative RT-PCR (qRT-PCR), RNA-seq and capture sequencing
(CaptureSeq) in terms of their ability to assemble and quantify long noncoding RNAs and …
(CaptureSeq) in terms of their ability to assemble and quantify long noncoding RNAs and …
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
High-throughput mRNA sequencing (RNA-Seq) promises simultaneous transcript discovery
and abundance estimation,,. However, this would require algorithms that are not restricted …
and abundance estimation,,. However, this would require algorithms that are not restricted …
IVT-seq reveals extreme bias in RNA sequencing
NF Lahens, IH Kavakli, R Zhang, K Hayer, MB Black… - Genome biology, 2014 - Springer
Background RNA-seq is a powerful technique for identifying and quantifying transcription
and splicing events, both known and novel. However, given its recent development and the …
and splicing events, both known and novel. However, given its recent development and the …
A single-molecule long-read survey of the human transcriptome
Global RNA studies have become central to understanding biological processes, but
methods such as microarrays and short-read sequencing are unable to describe an entire …
methods such as microarrays and short-read sequencing are unable to describe an entire …
From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing
GK Marinov, BA Williams, K McCue… - Genome …, 2014 - genome.cshlp.org
Single-cell RNA-seq mammalian transcriptome studies are at an early stage in uncovering
cell-to-cell variation in gene expression, transcript processing and editing, and regulatory …
cell-to-cell variation in gene expression, transcript processing and editing, and regulatory …