On the existence and functionality of topologically associating domains
JA Beagan, JE Phillips-Cremins - Nature genetics, 2020 - nature.com
Genomes across a wide range of eukaryotic organisms fold into higher-order chromatin
domains. Topologically associating domains (TADs) were originally discovered empirically …
domains. Topologically associating domains (TADs) were originally discovered empirically …
HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions
XT Wang, W Cui, C Peng - Nucleic acids research, 2017 - academic.oup.com
A current question in the high-order organization of chromatin is whether topologically
associating domains (TADs) are distinct from other hierarchical chromatin domains …
associating domains (TADs) are distinct from other hierarchical chromatin domains …
Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells
INTRODUCTION Chromatin adopts an intricate three-dimensional (3D) organization in the
nucleus that is critical for many genome processes, from gene regulation to genome …
nucleus that is critical for many genome processes, from gene regulation to genome …
[HTML][HTML] Chromatin-driven behavior of topologically associating domains
F Ciabrelli, G Cavalli - Journal of molecular biology, 2015 - Elsevier
Metazoan genomes are highly organized inside the cell nucleus. Topologically associating
domains (TADs) represent the building blocks of genome organization, but their linear …
domains (TADs) represent the building blocks of genome organization, but their linear …
Comparison of computational methods for the identification of topologically associating domains
M Zufferey, D Tavernari, E Oricchio, G Ciriello - Genome biology, 2018 - Springer
Background Chromatin folding gives rise to structural elements among which are clusters of
densely interacting DNA regions termed topologically associating domains (TADs). TADs …
densely interacting DNA regions termed topologically associating domains (TADs). TADs …
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
Mammalian chromosomes fold into arrays of megabase‐sized topologically associating
domains (TAD s), which are arranged into compartments spanning multiple megabases of …
domains (TAD s), which are arranged into compartments spanning multiple megabases of …
Defining functionally relevant spatial chromatin domains: it is a TAD complicated
N Sikorska, T Sexton - Journal of molecular biology, 2020 - Elsevier
Chromosome conformation capture and orthologous methods uncovered the spatial
organization of metazoan chromosomes into autonomously folded substructures, often …
organization of metazoan chromosomes into autonomously folded substructures, often …
Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
SV Ulianov, EE Khrameeva, AA Gavrilov… - Genome …, 2016 - genome.cshlp.org
Recent advances enabled by the Hi-C technique have unraveled many principles of
chromosomal folding that were subsequently linked to disease and gene regulation. In …
chromosomal folding that were subsequently linked to disease and gene regulation. In …
Principles of genome folding into topologically associating domains
Understanding the mechanisms that underlie chromosome folding within cell nuclei is
essential to determine the relationship between genome structure and function. The recent …
essential to determine the relationship between genome structure and function. The recent …
Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes
Understanding how regulatory sequences interact in the context of chromosomal
architecture is a central challenge in biology. Chromosome conformation capture revealed …
architecture is a central challenge in biology. Chromosome conformation capture revealed …