Pharmacophore fingerprinting. 1. Application to QSAR and focused library design

MJ McGregor, SM Muskal - Journal of chemical information and …, 1999 - ACS Publications
A new method of rapid pharmacophore fingerprinting (PharmPrint method) has been
developed. A basis set of 10 549 three-point pharmacophores has been constructed by …

Molecular shape and medicinal chemistry: a perspective

A Nicholls, GB McGaughey, RP Sheridan… - Journal of medicinal …, 2010 - ACS Publications
In his philosophic musings “Meditations” the Emperor Marcus Aurelius asks “This thing, what
is it in itself, in its own constitution? What is its substance and material? And what its causal …

Use of structural information in drug design: Current Opinion in Structural Biology 1992, 2: 202–210

MA Navia, MA Murcko - Current Opinion in Structural Biology, 1992 - Elsevier
Modern drug design increasingly relies on structural information for the improvement of in
vitro potency. Recently, these methods have been used to optimize in vitro properties as …

PHASE: a novel approach to pharmacophore modeling and 3D database searching

SL Dixon, AM Smondyrev… - Chemical biology & drug …, 2006 - Wiley Online Library
Pharmacophore modeling and 3D database searching are now recognized as integral
components of lead discovery and lead optimization, and the continuing need for improved …

The properties of known drugs. 1. Molecular frameworks

GW Bemis, MA Murcko - Journal of medicinal chemistry, 1996 - ACS Publications
In order to better understand the common features present in drug molecules, we use shape
description methods to analyze a database of commercially available drugs and prepare a …

3D database searching in drug design

YC Martin - Journal of Medicinal Chemistry, 1992 - ACS Publications
(1) Cohen, NC; Blaney, JM; Humblet, C.; Gund, P.; Barry, DC Molecular Modeling Software
and Methods for Medicinal Chemistry. J. Med. Chem. 1990, 33, 883-984.(2)(a) Goodford, PJ …

PHASE: a new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results

SL Dixon, AM Smondyrev, EH Knoll, SN Rao… - Journal of computer …, 2006 - Springer
We introduce PHASE, a highly flexible system for common pharmacophore identification
and assessment, 3D QSAR model development, and 3D database creation and searching …

Similarity and dissimilarity: a medicinal chemist's view

H Kubinyi - Perspectives in Drug Discovery and Design, 1998 - Springer
Several 3D approaches discussed in this volume describe methods for the analysis and
quantitative description of chemical similarity. The underlying concept is that chemical …

[图书][B] Pharmacophores and pharmacophore searches

R Mannhold, H Kubinyi, G Folkers - 2006 - Wiley Online Library
Pharmacophores and pharmacophore searches Edited by Thierry Langer and Rémy D.
Hoffmann Pharmacophores and Pharmacophore Searches Pharmacophores and …

Serendipity meets precision: the integration of structure-based drug design and combinatorial chemistry for efficient drug discovery

FR Salemme, J Spurlino, R Bone - Structure, 1997 - cell.com
Abstract Structure-based drug design uses three-dimensional visualization of drug
candidates bound to a target receptor to direct structural modifications that increase potency …