[HTML][HTML] Phylotyping and functional analysis of two ancient human microbiomes

RY Tito, S Macmil, G Wiley, F Najar, L Cleeland, C Qu… - PLoS …, 2008 - journals.plos.org
Background The Human Microbiome Project (HMP) is one of the US National Institutes of
Health Roadmap for Medical Research. Primary interests of the HMP include the …

[HTML][HTML] Insights from characterizing extinct human gut microbiomes

RY Tito, D Knights, J Metcalf, AJ Obregon-Tito… - PloS one, 2012 - journals.plos.org
In an effort to better understand the ancestral state of the human distal gut microbiome, we
examine feces retrieved from archaeological contexts (coprolites). To accomplish this, we …

[HTML][HTML] Reconstruction of ancient microbial genomes from the human gut

MC Wibowo, Z Yang, M Borry, A Hübner, KD Huang… - Nature, 2021 - nature.com
Loss of gut microbial diversity,,,,–in industrial populations is associated with chronic
diseases, underscoring the importance of studying our ancestral gut microbiome. However …

Comparison of extraction methods for recovering ancient microbial DNA from paleofeces

RW Hagan, CA Hofman, A Hübner… - American Journal of …, 2020 - Wiley Online Library
Objectives Paleofeces are valuable to archeologists and evolutionary biologists for their
potential to yield health, dietary, and host information. As a rich source of preserved …

[HTML][HTML] Insights into human evolution from ancient and contemporary microbiome studies

SL Schnorr, K Sankaranarayanan, CM Lewis Jr… - Current opinion in …, 2016 - Elsevier
Over the past decade, human microbiome research has energized the study of human
evolution through a complete shift in our understanding of what it means to be human. The …

[HTML][HTML] Paleomicrobiology: revealing fecal microbiomes of ancient indigenous cultures

RJ Cano, J Rivera-Perez, GA Toranzos… - PloS one, 2014 - journals.plos.org
Coprolites are fossilized feces that can be used to provide information on the composition of
the intestinal microbiota and, as we show, possibly on diet. We analyzed human coprolites …

[HTML][HTML] Microbial eukaryotes in the human microbiome: ecology, evolution, and future directions

LW Parfrey, WA Walters, R Knight - Frontiers in microbiology, 2011 - frontiersin.org
High throughput sequencing technology has opened a window into the vast communities of
bacteria that live on and in humans, demonstrating tremendous variability, and that they play …

[HTML][HTML] Components of a Neanderthal gut microbiome recovered from fecal sediments from El Salt

S Rampelli, S Turroni, C Mallol, C Hernandez… - Communications …, 2021 - nature.com
A comprehensive view of our evolutionary history cannot ignore the ancestral features of our
gut microbiota. To provide some glimpse into the past, we searched for human gut …

Towards standards for human fecal sample processing in metagenomic studies

PI Costea, G Zeller, S Sunagawa, E Pelletier… - Nature …, 2017 - nature.com
Technical variation in metagenomic analysis must be minimized to confidently assess the
contributions of microbiota to human health. Here we tested 21 representative DNA …

[HTML][HTML] Novel bacterial taxa in the human microbiome

KM Wylie, RM Truty, TJ Sharpton… - PloS one, 2012 - journals.plos.org
The human gut harbors thousands of bacterial taxa. A profusion of metagenomic sequence
data has been generated from human stool samples in the last few years, raising the …