[HTML][HTML] Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs

MR Woodhouse, JC Schnable, BS Pedersen… - PLoS …, 2010 - journals.plos.org
Previous work in Arabidopsis showed that after an ancient tetraploidy event, genes were
preferentially removed from one of the two homeologs, a process known as fractionation …

Patterns and consequences of subgenome differentiation provide insights into the nature of paleopolyploidy in plants

M Zhao, B Zhang, D Lisch, J Ma - The Plant Cell, 2017 - academic.oup.com
Polyploidy is an important feature of plant genomes, but the nature of many polyploidization
events remains to be elucidated. Here, we demonstrate that the evolutionary fates of the …

Shared subgenome dominance following polyploidization explains grass genome evolutionary plasticity from a seven protochromosome ancestor with 16K …

F Murat, R Zhang, S Guizard, R Flores… - Genome biology and …, 2014 - academic.oup.com
Modern plant genomes are diploidized paleopolyploids. We revisited grass genome
paleohistory in response to the diploidization process through a detailed investigation of the …

Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants

M Freeling, MR Woodhouse, S Subramaniam… - Current opinion in plant …, 2012 - Elsevier
Unlike in mammals, plants rapidly delete functionless, nonrepetitive DNA from their
genomes. Following paleopolyploidies, duplicate genes are deleted by intrachromosomal …

Incongruent patterns of local and global genome size evolution in cotton

CE Grover, HR Kim, RA Wing, AH Paterson… - Genome …, 2004 - genome.cshlp.org
Genome sizes in plants vary over several orders of magnitude, reflecting a combination of
differentially acting local and global forces such as biases in indel accumulation and …

[HTML][HTML] Cotton duplicated genes produced by polyploidy show significantly elevated and unbalanced evolutionary rates, overwhelmingly perturbing gene tree …

F Meng, Y Pan, J Wang, J Yu, C Liu, Z Zhang… - Frontiers in …, 2020 - frontiersin.org
A phylogenetic tree can be used to illustrate the evolutionary relationship between a group
of genes, especially duplicated genes, which are sources of genetic innovation and are …

Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy

J Rong, JE Bowers, SR Schulze… - Genome …, 2005 - genome.cshlp.org
Both ancient and recent polyploidy, together with post-polyploidization loss of many
duplicated gene copies, complicates angiosperm comparative genomics. To explore an …

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

KL Adams, R Cronn, R Percifield… - Proceedings of the …, 2003 - National Acad Sciences
Most eukaryotes have genomes that exhibit high levels of gene redundancy, much of which
seems to have arisen from one or more cycles of genome doubling. Polyploidy has been …

Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton (Gossypium) and Unequally between Subgenomes

JL Conover, JF Wendel - Molecular biology and evolution, 2022 - academic.oup.com
Whole-genome duplication (polyploidization) is among the most dramatic mutational
processes in nature, so understanding how natural selection differs in polyploids relative to …

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

JS Hawkins, SR Proulx, RA Rapp… - Proceedings of the …, 2009 - National Acad Sciences
Transposable elements, particularly LTR-retrotransposons, comprise the primary vehicle for
genome size expansion in plants, while DNA removal through illegitimate recombination …