Intergenomic gene transfer in diploid and allopolyploid Gossypium

N Zhao, CE Grover, Z Chen, JF Wendel, J Hua - BMC Plant Biology, 2019 - Springer
Background Intergenomic gene transfer (IGT) between nuclear and organellar genomes is a
common phenomenon during plant evolution. Gossypium is a useful model to evaluate the …

Genome-wide chromatin accessibility analysis unveils open chromatin convergent evolution during polyploidization in cotton

J Han, D Lopez-Arredondo, G Yu… - Proceedings of the …, 2022 - National Acad Sciences
Allopolyploidization, resulting in divergent genomes in the same cell, is believed to trigger a
“genome shock”, leading to broad genetic and epigenetic changes. However, little is …

Plant polyploidy: gene expression and genetic redundancy.

LD Gottlieb - Heredity, 2003 - nature.com
Allotetraploid plant species originate when the genomes of diploid species are brought
together in hybrids and then duplicated, a process apparently initiated by fertilization …

Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants

W Jiang, Y Liu, E Xia, L Gao - Plant physiology, 2013 - academic.oup.com
The evolution of genes and genomes after polyploidization has been the subject of
extensive studies in evolutionary biology and plant sciences. While a significant number of …

Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton

LE Flagel, L Chen, B Chaudhary… - Journal of …, 2009 - academic.oup.com
Within polyploid plant species, it has been demonstrated that homoeologous genes (genes
duplicated by polyploidy) often display dynamic expression patterns. To determine if …

Rapid flux in plant genomes

DF Voytas, GJP Naylor - nature genetics, 1998 - nature.com
1998 Nature America Inc.• http://genetics. nature. com news & views allowed the timing and
history of the tetraploid event to be reconstructed—analyses of sequence divergence among …

[HTML][HTML] Asymmetric evolution and domestication in allotetraploid cotton (Gossypium hirsutum L.)

L Fang, X Guan, T Zhang - The Crop Journal, 2017 - Elsevier
Polyploidy plays a major role in genome evolution, which corresponds to environmental
changes over millions of years. The mechanisms of genome evolution, particularly during …

Cotton pan-genome retrieves the lost sequences and genes during domestication and selection

J Li, D Yuan, P Wang, Q Wang, M Sun, Z Liu, H Si, Z Xu… - Genome biology, 2021 - Springer
Background Millennia of directional human selection has reshaped the genomic architecture
of cultivated cotton relative to wild counterparts, but we have limited understanding of the …

Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

BC Thomas, B Pedersen, M Freeling - Genome research, 2006 - genome.cshlp.org
Approximately 90% of Arabidopsis' unique gene content is found in syntenic blocks that
were formed during the most recent whole-genome duplication. Within these blocks, 28.6 …

High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane

O Garsmeur, C Charron, S Bocs, V Jouffe… - New …, 2011 - Wiley Online Library
Modern sugarcane (Saccharum spp.) is the leading sugar crop and a primary energy crop. It
has the highest level of 'vertical'redundancy (2n= 12x= 120) of all polyploid plants studied to …