A comparative epigenomic analysis of polyploidy-derived genes in soybean and common bean
Soybean (Glycine max) and common bean (Phaseolus vulgaris) share a paleopolyploidy
(whole-genome duplication [WGD]) event, approximately 56.5 million years ago, followed by …
(whole-genome duplication [WGD]) event, approximately 56.5 million years ago, followed by …
Gene retention, fractionation and subgenome differences in polyploid plants
All natural plant species are evolved from ancient polyploids. Polyloidization plays an
important role in plant genome evolution, species divergence and crop domestication. We …
important role in plant genome evolution, species divergence and crop domestication. We …
Comparative gene retention analysis in barley, wild emmer, and bread wheat pangenome lines reveals factors affecting gene retention following gene duplication
Background Gene duplication is a prevalent phenomenon and a major driving force
underlying genome evolution. The process leading to the fixation of gene duplicates …
underlying genome evolution. The process leading to the fixation of gene duplicates …
Rapid functional divergence after small-scale gene duplication in grasses
X Jiang, R Assis - BMC Evolutionary Biology, 2019 - Springer
Background Gene duplication has played an important role in the evolution and
domestication of flowering plants. Yet little is known about how plant duplicate genes evolve …
domestication of flowering plants. Yet little is known about how plant duplicate genes evolve …
Gene-expression novelty in allopolyploid cotton: a proteomic perspective
Allopolyploidization is accompanied by changes in gene expression that are thought to
contribute to phenotypic diversification. Here we describe global changes in the single …
contribute to phenotypic diversification. Here we describe global changes in the single …
The evolutionary position of subfunctionalization, downgraded
M Freeling - Plant genomes, 2008 - karger.com
Current data from complete eukaryotic genomes indicate that ancestral gene duplications,
followed by a mutational process called fractionation, generated profound and orderly …
followed by a mutational process called fractionation, generated profound and orderly …
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
It is often anticipated that many of today's diploid plant species are in fact paleopolyploids.
Given that an ancient large-scale duplication will result in an excess of relatively old …
Given that an ancient large-scale duplication will result in an excess of relatively old …
Whole-genome duplication and plant macroevolution
JW Clark, PCJ Donoghue - Trends in plant science, 2018 - cell.com
Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of
land plants. Unfortunately, the timings of WGD events are loosely constrained and …
land plants. Unfortunately, the timings of WGD events are loosely constrained and …
Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton
Transposable element (TE) amplification has been recognized as a driving force mediating
genome size expansion and evolution, but the consequences for shaping 3D genomic …
genome size expansion and evolution, but the consequences for shaping 3D genomic …
Genomic and expression plasticity of polyploidy
Polyploidy or whole genome duplication (WGD) occurs throughout the evolutionary history
of many plants and some animals, including crops such as wheat, cotton, and sugarcane …
of many plants and some animals, including crops such as wheat, cotton, and sugarcane …