Biased gene transfer in microbial evolution

CP Andam, JP Gogarten - Nature Reviews Microbiology, 2011 - nature.com
Horizontal gene transfer (HGT) is an important evolutionary process that allows the spread
of innovations between distantly related organisms. We present evidence that prokaryotes …

Horizontal gene transfer and phylogenetics

H Philippe, CJ Douady - Current opinion in microbiology, 2003 - Elsevier
The initial analysis of complete genomes has suggested that horizontal gene transfer events
are very frequent between microorganisms. This could potentially render the inference, and …

Mobile genetic elements: the agents of open source evolution

LS Frost, R Leplae, AO Summers… - Nature Reviews …, 2005 - nature.com
Horizontal genomics is a new field in prokaryotic biology that is focused on the analysis of
DNA sequences in prokaryotic chromosomes that seem to have originated from other …

Reconciling the many faces of lateral gene transfer

JG Lawrence, H Ochman - TRENDS in Microbiology, 2002 - cell.com
The various methods for detecting potential lateral gene transfer events typically uncover
different sets of genes. Because the procedures used to recognize transferred genes ask …

Lateral gene transfer: when will adolescence end?

JG Lawrence, H Hendrickson - Molecular microbiology, 2003 - Wiley Online Library
The scope and impact of horizontal gene transfer (HGT) in Bacteria and Archaea has grown
from a topic largely ignored by the microbiological community to a hot‐button issue gaining …

Functional and ecological impacts of horizontal gene transfer in eukaryotes

PJ Keeling - Current opinion in genetics & development, 2009 - Elsevier
Horizontal gene transfer (HGT) is known to have contributed to the content of eukaryotic
genomes, but the direct effects of HGT on eukaryotic evolution are more obscure because …

The influence of the accessory genome on bacterial pathogen evolution

RW Jackson, B Vinatzer, DL Arnold, S Dorus… - Mobile genetic …, 2011 - Taylor & Francis
Bacterial pathogens exhibit significant variation in their genomic content of virulence factors.
This reflects the abundance of strategies pathogens evolved to infect host organisms by …

Horizontal gene transfer in microbial genome evolution

R Jain, MC Rivera, JE Moore, JA Lake - Theoretical population biology, 2002 - Elsevier
Horizontal gene transfer is the collective name for processes that permit the exchange of
DNA among organisms of different species. Only recently has it been recognized as a …

Cues and regulatory pathways involved in natural competence and transformation in pathogenic and environmental Gram-negative bacteria

P Seitz, M Blokesch - FEMS microbiology reviews, 2013 - academic.oup.com
Bacterial genomics is flourishing, as whole-genome sequencing has become affordable,
readily available and rapid. As a result, it has become clear how frequently horizontal gene …

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria

HA Thorpe, SC Bayliss, SK Sheppard, EJ Feil - Gigascience, 2018 - academic.oup.com
Background The concept of the “pan-genome,” which refers to the total complement of
genes within a given sample or species, is well established in bacterial genomics. Rapid …