Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
C Naughton, N Avlonitis, S Corless… - Nature structural & …, 2013 - nature.com
DNA supercoiling is an inherent consequence of twisting DNA and is critical for regulating
gene expression and DNA replication. However, DNA supercoiling at a genomic scale in …
gene expression and DNA replication. However, DNA supercoiling at a genomic scale in …
[HTML][HTML] Supercoiling in DNA and chromatin
N Gilbert, J Allan - Current opinion in genetics & development, 2014 - Elsevier
Supercoiling is a fundamental property of DNA and chromatin. It is modulated by
polymerase and topoisomerase activities and, through regulated constraint, by …
polymerase and topoisomerase activities and, through regulated constraint, by …
Transcription-dependent dynamic supercoiling is a short-range genomic force
F Kouzine, A Gupta, L Baranello, D Wojtowicz… - Nature structural & …, 2013 - nature.com
Transcription has the capacity to mechanically modify DNA topology, DNA structure and
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …
Effects of DNA supercoiling on chromatin architecture
Disruptions in chromatin structure are necessary for the regulation of eukaryotic genomes,
from remodelling of nucleosomes at the base pair level through to large-scale chromatin …
from remodelling of nucleosomes at the base pair level through to large-scale chromatin …
Enhancer hubs and loop collisions identified from single-allele topologies
A Allahyar, C Vermeulen, BAM Bouwman, PHL Krijger… - Nature …, 2018 - nature.com
Chromatin folding contributes to the regulation of genomic processes such as gene activity.
Existing conformation capture methods characterize genome topology through analysis of …
Existing conformation capture methods characterize genome topology through analysis of …
Chromatin higher order folding--wrapping up transcription
PJ Horn, CL Peterson - Science, 2002 - science.org
Eukaryotic genomes are organized into condensed, heterogeneous chromatin fibers
throughout much of the cell cycle. Here we describe recent studies indicating that even …
throughout much of the cell cycle. Here we describe recent studies indicating that even …
Cellular strategies for regulating DNA supercoiling: a single-molecule perspective
Entangling and twisting of cellular DNA (ie, supercoiling) are problems inherent to the
helical structure of double-stranded DNA. Supercoiling affects transcription, DNA replication …
helical structure of double-stranded DNA. Supercoiling affects transcription, DNA replication …
Three-dimensional genome architecture: players and mechanisms
A Pombo, N Dillon - Nature reviews Molecular cell biology, 2015 - nature.com
The different cell types of an organism share the same DNA, but during cell differentiation
their genomes undergo diverse structural and organizational changes that affect gene …
their genomes undergo diverse structural and organizational changes that affect gene …
Transcription-mediated supercoiling regulates genome folding and loop formation
The chromatin fiber folds into loops, but the mechanisms controlling loop extrusion are still
poorly understood. Using super-resolution microscopy, we visualize that loops in intact …
poorly understood. Using super-resolution microscopy, we visualize that loops in intact …