Acinetobacter baylyi ADP1 as a model for metabolic system biology
V de Berardinis, M Durot, J Weissenbach… - Current opinion in …, 2009 - Elsevier
Information produced by the annotation of an 'average bacterial genome'can be separated
into three parts. One-third represents what we know, another third what we think we know …
into three parts. One-third represents what we know, another third what we think we know …
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium
V Barbe, D Vallenet, N Fonknechten… - Nucleic acids …, 2004 - academic.oup.com
Acinetobacter sp. strain ADP1 is a nutritionally versatile soil bacterium closely related to
representatives of the well-characterized Pseudomonas aeruginosa and Pseudomonas …
representatives of the well-characterized Pseudomonas aeruginosa and Pseudomonas …
An Expanded Synthetic Biology Toolkit for Gene Expression Control in Acetobacteraceae
The availability of different host chassis will greatly expand the range of applications in
synthetic biology. Members of the Acetobacteraceae family of Gram-negative bacteria form …
synthetic biology. Members of the Acetobacteraceae family of Gram-negative bacteria form …
Synthetic biology toolbox, including a single-plasmid CRISPR-Cas9 system to biologically engineer the electrogenic, metal-resistant bacterium Cupriavidus …
F Turco, M Garavaglia, R Van Houdt, P Hill… - ACS Synthetic …, 2022 - ACS Publications
Cupriavidus metallidurans CH34 exhibits extraordinary metabolic versatility, including
chemolithoautotrophic growth; degradation of BTEX (benzene, toluene, ethylbenzene …
chemolithoautotrophic growth; degradation of BTEX (benzene, toluene, ethylbenzene …
Characterization and Modeling of Transcriptional Cross-Regulation in Acinetobacter baylyi ADP1
D Zhang, Y Zhao, Y He, Y Wang, Y Zhao… - Acs Synthetic …, 2012 - ACS Publications
Synthetic biology involves reprogramming and engineering of regulatory genes in
innovative ways for the implementation of novel tasks. Transcriptional gene regulation …
innovative ways for the implementation of novel tasks. Transcriptional gene regulation …
Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data
M Durot, F Le Fèvre, V de Berardinis, A Kreimeyer… - BMC systems …, 2008 - Springer
Background Genome-scale metabolic models are powerful tools to study global properties
of metabolic networks. They provide a way to integrate various types of biological …
of metabolic networks. They provide a way to integrate various types of biological …
A complete collection of single‐gene deletion mutants of Acinetobacter baylyi ADP1
V De Berardinis, D Vallenet, V Castelli… - Molecular systems …, 2008 - embopress.org
We have constructed a collection of single‐gene deletion mutants for all dispensable genes
of the soil bacterium Acinetobacter baylyi ADP1. A total of 2594 deletion mutants were …
of the soil bacterium Acinetobacter baylyi ADP1. A total of 2594 deletion mutants were …
High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration
Efficient genome engineering is critical to understand and use microbial functions. Despite
recent development of tools such as CRISPR-Cas gene editing, efficient integration of …
recent development of tools such as CRISPR-Cas gene editing, efficient integration of …
CRISPR interference–mediated metabolic engineering of Corynebacterium glutamicum for homo‐butyrate production
J Yoon, HM Woo - Biotechnology and bioengineering, 2018 - Wiley Online Library
Combinatorial metabolic engineering enabled the development of efficient microbial cell
factories for modulating gene expression to produce desired products. Here, we report the …
factories for modulating gene expression to produce desired products. Here, we report the …
Genome-wide CRISPRi screen identifies enhanced autolithotrophic phenotypes in acetogenic bacterium Eubacterium limosum
Acetogenic bacteria are a unique biocatalyst that highly promises to develop the sustainable
bioconversion of carbon oxides (eg, CO and CO2) into multicarbon biochemicals. Genotype …
bioconversion of carbon oxides (eg, CO and CO2) into multicarbon biochemicals. Genotype …