Evaluation of RR‐BLUP genomic selection models that incorporate peak genome‐wide association study signals in maize and sorghum

B Rice, AE Lipka - The Plant Genome, 2019 - Wiley Online Library
Certain agronomic crop traits are complex and thus governed by many small‐effect loci.
Statistical models typically used in a genome‐wide association study (GWAS) and genomic …

Ridge regression and other kernels for genomic selection with R package rrBLUP

JB Endelman - The plant genome, 2011 - Wiley Online Library
Many important traits in plant breeding are polygenic and therefore recalcitrant to traditional
marker‐assisted selection. Genomic selection addresses this complexity by including all …

[HTML][HTML] Accuracy of single and multi-trait genomic prediction models for grain yield in US Pacific Northwest winter wheat

DN Lozada, AH Carter - Crop Breeding, Genetics and Genomics, 2019 - hapres.com
Incorporating secondary correlated traits collected from high-throughput phenotyping in
genomic selection (GS) models for complex traits has been demonstrated to improve …

[HTML][HTML] Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement

JE Spindel, H Begum, D Akdemir, B Collard, E Redoña… - Heredity, 2016 - nature.com
To address the multiple challenges to food security posed by global climate change,
population growth and rising incomes, plant breeders are developing new crop varieties that …

Whole-genome regression and prediction methods applied to plant and animal breeding

G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …

Genomic selection using multiple populations

T Schulz‐Streeck, JO Ogutu, Z Karaman… - Crop …, 2012 - Wiley Online Library
Using different populations in genomic selection raises the possibility of marker effects
varying across populations. However, common models for genomic selection only account …

[HTML][HTML] Factors affecting genomic selection revealed by empirical evidence in maize

X Liu, H Wang, H Wang, Z Guo, X Xu, J Liu, S Wang… - The Crop Journal, 2018 - Elsevier
Genomic selection (GS) as a promising molecular breeding strategy has been widely
implemented and evaluated for plant breeding, because it has remarkable superiority in …

[HTML][HTML] Genomic prediction models for traits differing in heritability for soybean, rice, and maize

AS Kaler, LC Purcell, T Beissinger, JD Gillman - BMC plant biology, 2022 - Springer
Background Genomic selection is a powerful tool in plant breeding. By building a prediction
model using a training set with markers and phenotypes, genomic estimated breeding …

A comparison of genomic selection methods for breeding value prediction

X Wang, Z Yang, C Xu - Science Bulletin, 2015 - Elsevier
Recent advances in molecular genetics techniques have made dense marker maps
available, and the prediction of breeding value at the genome level has been employed in …

[HTML][HTML] Genomic prediction and GWAS of yield, quality and disease-related traits in spring barley and winter wheat

HY Tsai, LL Janss, JR Andersen, J Orabi, JD Jensen… - Scientific reports, 2020 - nature.com
Genome-wide association study (GWAS) and genomic prediction (GP) are extensively
employed to accelerate genetic gain and identify QTL in plant breeding. In this study, 1,317 …