Exploring the diversity and evolutionary strategies of prophages in Hyphomicrobiales, comparing animal-associated with non-animal-associated bacteria

J Gonçalves-Oliveira, T Pattenden, Y Nachum-Biala… - BMC microbiology, 2024 - Springer
The Hyphomicrobiales bacterial order (previously Rhizobiales) exhibits a wide range of
lifestyle characteristics, including free-living, plant-association, nitrogen-fixing, and …

[PDF][PDF] Prophages domesticated by bacteria promote the adaptability of bacterial cells

Z Liu, Y Deng, M Ji, W Sun, X Fan - Biocell, 2020 - researchgate.net
Prophages are temperate phages integrated into the host bacterial genome. They play an
important role in the adaptation and the pathogenicity of bacteria, especially pathogenic …

Prophage-DB: A comprehensive database to explore diversity, distribution, and ecology of prophages

E Dieppa-Colón, C Martin, K Anantharaman - bioRxiv, 2024 - biorxiv.org
Background. Viruses that infect prokaryotes (phages) constitute the most abundant group of
biological agents, playing pivotal roles in microbial systems. They are known to impact …

Mining of thousands of prokaryotic genomes reveals high abundance of prophages with a strictly narrow host range

G López-Leal, LC Camelo-Valera… - Msystems, 2022 - Am Soc Microbiol
Phages and prophages are one of the principal modulators of microbial populations.
However, much of their diversity is still poorly understood. Here, we extracted 33,624 …

A novel group of promiscuous podophages infecting diverse gammaproteobacteria from river communities exhibits dynamic intergenus host adaptation

D Cazares, A Cazares, W Figueroa, G Guarneros… - …, 2021 - Am Soc Microbiol
Phages are generally described as species specific or even strain specific, implying an
inherent limitation for some to be maintained and spread in diverse bacterial communities …

Mining of thousands of prokaryotic genomes reveals high abundance of prophage signals

G López-Leal, LC Camelo-Valera… - bioRxiv, 2021 - biorxiv.org
Phages and prophages are one of the principal modulators of microbial populations.
However, much of their diversity is still poorly understood. Here, we extracted 33,624 …

A Biological Inventory of Prophages in A. baumannii Genomes Reveal Distinct Distributions in Classes, Length, and Genomic Positions

B Loh, J Chen, P Manohar, Y Yu, X Hua… - Frontiers in …, 2020 - frontiersin.org
Acinetobacter baumannii is of major clinical importance as the bacterial pathogen often
causes hospital acquired infections, further complicated by the high prevalence of antibiotic …

Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria

PE Dougherty, TK Nielsen, L Riber, HH Lading… - The ISME …, 2023 - academic.oup.com
Environmental bacteria host an enormous number of prophages, but their diversity and
natural functions remain largely elusive. Here, we investigate prophage activity and diversity …

Genomic Analysis Unveils the Pervasiveness and Diversity of Prophages Infecting Erwinia Species

T Morgan, RR Rezende, TTM Lima, FO Souza… - Pathogens, 2022 - mdpi.com
Prophages are abundant elements integrated into bacterial genomes and contribute to inter-
strain genetic variability and, in some cases, modulate the environmental behavior of …

Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion

H Brüssow, C Canchaya… - … and molecular biology …, 2004 - Am Soc Microbiol
Comparative genomics demonstrated that the chromosomes from bacteria and their viruses
(bacteriophages) are coevolving. This process is most evident for bacterial pathogens where …