Interpreting protein variant effects with computational predictors and deep mutational scanning
BJ Livesey, JA Marsh - Disease Models & Mechanisms, 2022 - journals.biologists.com
Computational predictors of genetic variant effect have advanced rapidly in recent years.
These programs provide clinical and research laboratories with a rapid and scalable method …
These programs provide clinical and research laboratories with a rapid and scalable method …
Automated inference of molecular mechanisms of disease from amino acid substitutions
Motivation: Advances in high-throughput genotyping and next generation sequencing have
generated a vast amount of human genetic variation data. Single nucleotide substitutions …
generated a vast amount of human genetic variation data. Single nucleotide substitutions …
Cataloging coding sequence variations in human genome databases
HH Won, HJ Kim, KA Lee, JW Kim - PloS one, 2008 - journals.plos.org
Background With the recent growth of information on sequence variations in the human
genome, predictions regarding the functional effects and relevance to disease phenotypes …
genome, predictions regarding the functional effects and relevance to disease phenotypes …
The amino-acid mutational spectrum of human genetic disease
Background Nonsynonymous mutations in the coding regions of human genes are
responsible for phenotypic differences between humans and for susceptibility to genetic …
responsible for phenotypic differences between humans and for susceptibility to genetic …
Single nucleotide variations: biological impact and theoretical interpretation
Genome‐wide association studies (GWAS) and whole‐exome sequencing (WES) generate
massive amounts of genomic variant information, and a major challenge is to identify which …
massive amounts of genomic variant information, and a major challenge is to identify which …
Predicting functional consequences of mutations using molecular interaction network features
K Ozturk, H Carter - Human genetics, 2022 - Springer
Variant interpretation remains a central challenge for precision medicine. Missense variants
are particularly difficult to understand as they change only a single amino acid in a protein …
are particularly difficult to understand as they change only a single amino acid in a protein …
Quantification of the effect of mutations using a global probability model of natural sequence variation
Modern biomedicine is challenged to predict the effects of genetic variation. Systematic
functional assays of point mutants of proteins have provided valuable empirical information …
functional assays of point mutants of proteins have provided valuable empirical information …
Toward developing intuitive rules for protein variant effect prediction using deep mutational scanning data
CK Sruthi, H Balaram, MK Prakash - ACS omega, 2020 - ACS Publications
Protein structure and function can be severely altered by even a single amino acid mutation.
Predictions of mutational effects using extensive artificial intelligence (AI)-based models …
Predictions of mutational effects using extensive artificial intelligence (AI)-based models …
GEMME: a simple and fast global epistatic model predicting mutational effects
The systematic and accurate description of protein mutational landscapes is a question of
utmost importance in biology, bioengineering, and medicine. Recent progress has been …
utmost importance in biology, bioengineering, and medicine. Recent progress has been …
Structural and functional restraints on the occurrence of single amino acid variations in human proteins
S Gong, TL Blundell - PLOS one, 2010 - journals.plos.org
Human genetic variation is the incarnation of diverse evolutionary history, which reflects
both selectively advantageous and selectively neutral change. In this study, we catalogue …
both selectively advantageous and selectively neutral change. In this study, we catalogue …